1 5' 3' | 2 5' 3' | 3 5' 3' |
GGCCCCATTTTAATCCTCACAATAAGTCCCATGGGGCACCATCTGATGATGAAAGACATGTGGGCGACCTGGGAAACATAGTAGCCAACAAAGATGgttagcactctgtcaggccgtctacattaagacctttgaggcaactaacgcaaagaaactttgtaaattaattcatgtgtgtctaccaataatacatcacctttttgttccag
species | Oryza sativa |
transcript | LOC_Os03g11960.4 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGATGAAAGACATGTGGGCGACCTGGGAAACATAGTAGCCAACAAAGATG GTGTTGCAGATATCTTCATAAAGGACCTACAGGTTCCATTGTCTTGAAATAEST: gi|88352523|gb|CI654348.1|CI654348
genomic: TGATGAAAGACATGTGGGCGACCTGGGAAACATAGTAGCCAACAAAGATGgttagcactc ... tttgttccagGTGTTGCAGATATCTTCATAAAGGACCTACAGGTTCCATTGTCTTGAAATA
EST: TGATGAAAGACATGTGGGCGACCTGGGAAACATAGTAGCCAACAAAGATG GTGTTGCAGATATCTTCATAAAGGACCTACAGEST: gi|58030755|gb|CX728298.1|CX728298
genomic: TGATGAAAGACATGTGGGCGACCTGGGAAACATAGTAGCCAACAAAGATGgttagcactc ... tttgttccagGTGTTGCAGATATCTTCATAAAGGACCTACAG
EST: TGATGAAAGACATGTGGGCGACCTGGGAAACATAGTAGCCAACAAAGATG GTGTTGCAGATATCTTCATAAAGGACCTACAGGTTCCATTGTCTTGAAATA
genomic: TGATGAAAGACATGTGGGCGACCTGGGAAACATAGTAGCCAACAAAGATGgttagcactc ... tttgttccagGTGTTGCAGATATCTTCATAAAGGACCTACAGGTTCCATTGTCTTGAAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCCCATTTTAATCCTCACAATAAGTCCCATGGGGCACCATCTGATGATGAAAGACATGTGGGCGACCTGGGAAACATAGTAGCCAACAAAGATGgttagcactctgtcaggccgtctacattaagacctttgaggcaactaacgcaaagaaactttgtaaattaattcatgtgtgtctaccaataatacatcacctttttgttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG