1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CAGCTATTGCCCAACTTGGGCACTTTCATGGCCTTACAGAAGACAAAATTTGCTGCGTGAAATAATTGGTTACCATGCGGATATCATCTGCCTTCAGGAGgtatgccattttaattgttatcctttttttatagaaaatatttgaaagatctgaatgttgcatatctaccacttccgacttacatatgtaaagtgcgcga...
species | Oryza sativa |
transcript | LOC_Os03g07080.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGCTGCGTGAAATAATTGGTTACCATGCGGATATCATCTGCCTTCAGGAG GTACAAAGTAACCACTTTGAAGAATTCTTTGCACCGGAGCTTGACAAACATEST: gi|58612497|gb|CK040209.1|CK040209
genomic: TGCTGCGTGAAATAATTGGTTACCATGCGGATATCATCTGCCTTCAGGAGgtatgccatt ... ctactttcagGTACAAAGTAACCACTTTGAAGAATTCTTTGCACCGGAGCTTGACAAACAT
EST: GCGGATATCATCTGCCTTCAGGAG GTACAAAGTAACCACTTTGAAGAATTC-TTGCAGCGGAGCTTGACAAACATEST: gi|29678434|gb|CB674709.1|CB674709
genomic: GCGGATATCATCTGCCTTCAGGAGgtatgccatt ... ctactttcagGTACAAAGTAACCACTTTGAAGAATTCTTTGCACCGGAGCTTGACAAACAT
EST: TGCTGCGTGAAATAATTGGTTACCATGCGGATATCATCTGCCTTCAGGAG GTACAAAGTAACCACTTTGAAGAATTCTTTGCACCGGAGCTTGACAAACAT
genomic: TGCTGCGTGAAATAATTGGTTACCATGCGGATATCATCTGCCTTCAGGAGgtatgccatt ... ctactttcagGTACAAAGTAACCACTTTGAAGAATTCTTTGCACCGGAGCTTGACAAACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCTATTGCCCAACTTGGGCACTTTCATGGCCTTACAGAAGACAAAATTTGCTGCGTGAAATAATTGGTTACCATGCGGATATCATCTGCCTTCAGGAGgtatgccattttaattgttatcctttttttatagaaaatatttgaaagatctgaatgttgcatatctaccacttccgacttacatatgtaaagtgcgcga
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC