1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAAAAGCTGACTCTAATCACACAAAAGTCAGTGAAGATAGTGCAAAAACATATCATGATGACTCTCCAAAGAAGCAAAAGGATGCCTGCACTGCACCACGgttagtaagtttaactagtttctttcggtgactatcttcttatgatgtgggttgcagtggtaaaaaaggcagtgtataaaaccttttctcattaagtaac...
species | Oryza sativa |
transcript | LOC_Os03g06120.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCATGATGACTCTCCAAAGAAGCAAAAGGATGCCTGCACTGCACCACG AAGTTCTCCGCCATCTTCTTATGGCCATGATCTGGTCTCAAGCAGAGGATCEST: gi|58681562|gb|CK070249.1|CK070249
genomic: TCATGATGACTCTCCAAAGAAGCAAAAGGATGCCTGCACTGCACCACGgttagtaagt ... tctttctcagAAGTTCTCCGCCATCTTCTTATGGCCATGATCTGGTCTCAAGCAGAGGATC
EST: TATCATGATGACTCTCCAAAGAAGCAAAAGGATGCCTGCACTGCACCACG AAGTTCTCCGCCATCTTCTTATGGCCATGATCTGGTCTCAAGCAGAGGATCEST: gi|58673353|gb|CK062039.1|CK062039
genomic: TATCATGATGACTCTCCAAAGAAGCAAAAGGATGCCTGCACTGCACCACGgttagtaagt ... tctttctcagAAGTTCTCCGCCATCTTCTTATGGCCATGATCTGGTCTCAAGCAGAGGATC
EST: TATCATGATGACTCTCCAAAGAAGCAAAAGGATGCCTGCACTGCACCACG AAGTTCTCCGCCATCTTCTTATGGCCATGATCTGGTCTCAAGCAGAGGATCEST: gi|29637808|gb|CB642817.1|CB642817
genomic: TATCATGATGACTCTCCAAAGAAGCAAAAGGATGCCTGCACTGCACCACGgttagtaagt ... tctttctcagAAGTTCTCCGCCATCTTCTTATGGCCATGATCTGGTCTCAAGCAGAGGATC
EST: TATCATGATGACTCTCCAAAGAAGCAAAAGGATGCCTGCACTGCACCACG AAGTTCTCCGCCATCTTCTTATGGCCATGATCTGGTCTCAAGCAGAGGATCEST: gi|33803494|gb|CF327622.1|CF327622
genomic: TATCATGATGACTCTCCAAAGAAGCAAAAGGATGCCTGCACTGCACCACGgttagtaagt ... tctttctcagAAGTTCTCCGCCATCTTCTTATGGCCATGATCTGGTCTCAAGCAGAGGATC
EST: TATCATGATGACTCTCCAAAGAAGCAAAAGGATGCCTGCACAGCACCACG AAGTTCTCCGCCATCTTCTTATGGCCATGATCTGGTCTCAAGCAGAGGATCEST: gi|27554129|gb|CA998029.1|CA998029
genomic: TATCATGATGACTCTCCAAAGAAGCAAAAGGATGCCTGCACTGCACCACGgttagtaagt ... tctttctcagAAGTTCTCCGCCATCTTCTTATGGCCATGATCTGGTCTCAAGCAGAGGATC
EST: TATCATGATGACTCTCCAAAGAAGCAAAAGGATGCCTGCACTGCACCACG AAGTTCTCCGCCATCTTCTTATGGCCATGATCTGGTCTCATGCAGATGATCEST: gi|27548516|gb|CA766467.2|CA766467
genomic: TATCATGATGACTCTCCAAAGAAGCAAAAGGATGCCTGCACTGCACCACGgttagtaagt ... tctttctcagAAGTTCTCCGCCATCTTCTTATGGCCATGATCTGGTCTCAAGCAGAGGATC
EST: TATCATGATGACTCTCCAAAGAAGCAAAAGGATGCCTGCACTGCACCACG AAGTTCTCCGCCATCTTCTTATGGCCATGATCTGGTCTCAAGCAGAGGATC
genomic: TATCATGATGACTCTCCAAAGAAGCAAAAGGATGCCTGCACTGCACCACGgttagtaagt ... tctttctcagAAGTTCTCCGCCATCTTCTTATGGCCATGATCTGGTCTCAAGCAGAGGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAAGCTGACTCTAATCACACAAAAGTCAGTGAAGATAGTGCAAAAACATATCATGATGACTCTCCAAAGAAGCAAAAGGATGCCTGCACTGCACCACGgttagtaagtttaactagtttctttcggtgactatcttcttatgatgtgggttgcagtggtaaaaaaggcagtgtataaaaccttttctcattaagtaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG