1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGCACTTCTCATGGGGCTTAACATGTCATGGACAGCCATCACTGCGGCTCTTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAGgtatgattttacttactgatgcctgaatcaacaatttatctgaatcatgttcattgggacaattaaatttcatgtgtttgccatgtctgatgatag
species | Oryza sativa |
transcript | LOC_Os03g05390.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAG GTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGATEST: gi|25798436|gb|CA754397.1|CA754397
genomic: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAGgtatgatttt ... ctgatgatagGTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGAT
EST: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAG GTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGATEST: gi|313084033|gb|HO213816.1|HO213816
genomic: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAGgtatgatttt ... ctgatgatagGTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGAT
EST: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAG GTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGATEST: gi|88985311|gb|CI002828.1|CI002828
genomic: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAGgtatgatttt ... ctgatgatagGTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGAT
EST: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAG GTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGATEST: gi|29629817|gb|CB634826.1|CB634826
genomic: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAGgtatgatttt ... ctgatgatagGTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGAT
EST: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAG GTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGATEST: gi|29644052|gb|CB649059.1|CB649059
genomic: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAGgtatgatttt ... ctgatgatagGTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGAT
EST: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAG GTGTCATACTCATTGCTGATCTTCTTCTGCEST: gi|33381166|gb|CF196509.1|CF196509
genomic: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAGgtatgatttt ... ctgatgatagGTGTCATACTCATTGCTGATCTTCTTCTGC
EST: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTNNNNNNN NTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGATEST: gi|428144|gb|D24292.1|D24292
genomic: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAGgtatgatttt ... ctgatgatagGTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGAT
EST: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAG GTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGNTEST: gi|14571450|gb|BI118818.1|BI118818
genomic: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAGgtatgatttt ... ctgatgatagGTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGAT
EST: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAG GTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACAGTCGATEST: gi|218490860|gb|FG966651.1|FG966651
genomic: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAGgtatgatttt ... ctgatgatagGTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGAT
EST: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAG GTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGATEST: gi|33684354|gb|CF312593.1|CF312593
genomic: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAGgtatgatttt ... ctgatgatagGTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGAT
EST: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAG GTGTCATACTCATTGCTGATCTTCTTCGGCGGGATGTTTATTACGGTCGATEST: gi|88974168|gb|CI002787.1|CI002787
genomic: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAGgtatgatttt ... ctgatgatagGTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGAT
EST: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAG GTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGATEST: gi|38473979|gb|CF958111.1|CF958111
genomic: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAGgtatgatttt ... ctgatgatagGTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGAT
EST: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAG GTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGATEST: gi|218481056|gb|FG966658.1|FG966658
genomic: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAGgtatgatttt ... ctgatgatagGTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGAT
EST: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAG GTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGATEST: gi|58670085|gb|CK058771.1|CK058771
genomic: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAGgtatgatttt ... ctgatgatagGTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGAT
EST: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAG GTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGAT
genomic: TTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAGgtatgatttt ... ctgatgatagGTGTCATACTCATTGCTGATCTTCTTCTGCGGGATGTTTATTACGGTCGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCACTTCTCATGGGGCTTAACATGTCATGGACAGCCATCACTGCGGCTCTTGTTCTTCTGGCGCTTGATTTTACTGATGCACAGGCTTGTCTGGAGAAGgtatgattttacttactgatgcctgaatcaacaatttatctgaatcatgttcattgggacaattaaatttcatgtgtttgccatgtctgatgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA