1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTAGAAAAACGGCGCACTAAGACGGAGAAAACAGTTAGCCTGCAAGATCTTCGGAAGCATTTTGCTGGTAGCCTGAAAGAAGCTGCAAAGAATTTAGGAGgtattttaatgacaaatgatctctgaaatggctggcttccttaccttttttaaaattattttttgcagcttttcctgtacatttatctccttgaagcatg...
species | Oryza sativa |
transcript | LOC_Os03g03900.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCGGAAGCATTTTGCTGGTAGCCTGAAAGAAGCTGCAAAGAATTTAGGAG TGTGCCCGACTACACTGAAGAGAATATGCAGGCAGCATGGAATTAATCGTTEST: gi|58589994|gb|CF988302.1|CF988302
genomic: TCGGAAGCATTTTGCTGGTAGCCTGAAAGAAGCTGCAAAGAATTTAGGAGgtattttaat ... tttgttccagTGTGCCCGACTACACTGAAGAGAATATGCAGGCAGCATGGAATTAATCGTT
EST: TCGGAAGCA-TTTGCTGGTAGCCTGAAAGAAGCTGCAAAGAATTTAGGAG TGTGCCCGACTACACTGAAGAGAATATGCAGGCAGCATGGAATTAATCGTNEST: gi|29624581|gb|CB629592.1|CB629592
genomic: TCGGAAGCATTTTGCTGGTAGCCTGAAAGAAGCTGCAAAGAATTTAGGAGgtattttaat ... tttgttccagTGTGCCCGACTACACTGAAGAGAATATGCAGGCAGCATGGAATTAATCGTT
EST: TCGGAAGCATTTTGCTGGTAGCCTGAAAGAAGCTGCAAAGAATTTAGGAG TGTGCCCGACTACACTGAAGAGAATATGCAGGCAGCATGGAATTAATCGTT
genomic: TCGGAAGCATTTTGCTGGTAGCCTGAAAGAAGCTGCAAAGAATTTAGGAGgtattttaat ... tttgttccagTGTGCCCGACTACACTGAAGAGAATATGCAGGCAGCATGGAATTAATCGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGAAAAACGGCGCACTAAGACGGAGAAAACAGTTAGCCTGCAAGATCTTCGGAAGCATTTTGCTGGTAGCCTGAAAGAAGCTGCAAAGAATTTAGGAGgtattttaatgacaaatgatctctgaaatggctggcttccttaccttttttaaaattattttttgcagcttttcctgtacatttatctccttgaagcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA