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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACGACGTCTTCGCCATCACCAACGCCGTCCCGGCCATGTCCCTCCTCGCCTACGGCTTCTTCACCCGCGGCCTCGTCCCCGGCCTCTGCTTCGGCGCGgtgagtggtcgatcctcctccatttcaaccaaatccccatcacttctctcaaacacactgtaccaggatttgaccaagcgtgcttaacgtggccgtatta...

Basic information

species Oryza sativa
transcript LOC_Os03g03370.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g03370.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G382534_T01 (Zea mays), 5'ss of exon 3
CAACGACGTCTTCGCCATCACCAACGCCGTCCCGGCCATGTCCCTCCTCGCCTACGGCTTCTTCACCCGCGGCCTCGTCCCCGGCCTCTGCTTCGGCGCGgtgagtggtcgatcctcctccatttcaaccaaatccccatcacttctctcaaacacactgtaccaggatttgaccaagcgtgcttaacgtggccgtatta--
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CAACGACGTGTTCGCCATCGTCAACGCCGTCCCGGCCATGTCCCTCCTCGCCTACGGCTTCTTCAACCGGGGCCTCGTCCCGGGCCTCTGCTTCGGCGCGgtgagt-----------ctctctgccgacgacgatccactctttgtgcacacgctagct-tggccggttcttctctgacgtgcctcgcggcgtcgctcgcag