1 5' 3' | 2 5' 3' | 3 5' 3' |
GATAAAAGTTTCACCTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTCAAGGCAGCAGgtgtgcacccttttagctagcatgaatctataattttgtttcgtccatgtattgaatttgcgatatgtttatacggttggacaaaataaaatgaaaacac...
species | Oryza sativa |
transcript | LOC_Os03g03020.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTCAAGGCAGCAG GTATCGAGAAAGGEST: gi|38471941|gb|CF956072.1|CF956072
genomic: CTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTCAAGGCAGCAGgtgtgcaccc ... ttattcttagGTATCGAGAAAGG
EST: CTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTCAAGGCAGCAG GTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAAEST: gi|86849082|gb|CI295830.1|CI295830
genomic: CTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTCAAGGCAGCAGgtgtgcaccc ... ttattcttagGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAA
EST: CTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTCAAGGCAGCAG GTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAAEST: gi|15008427|gb|AU222815.1|AU222815
genomic: CTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTCAAGGCAGCAGgtgtgcaccc ... ttattcttagGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAA
EST: CCTTCTCCNCAAGGCGGCAG GTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGNAAAAGTAAEST: gi|38476622|gb|CF960755.1|CF960755
genomic: CCTTCTCCTCAAGGCAGCAGgtgtgcaccc ... ttattcttagGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAA
EST: CTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTCAAGGCAGCAG GTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAAEST: gi|7378433|gb|AU088704.1|AU088704
genomic: CTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTCAAGGCAGCAGgtgtgcaccc ... ttattcttagGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAA
EST: TTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTCAAAGGCAGCAG GTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAAEST: gi|58690577|gb|CK079264.1|CK079264
genomic: TTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTC-AAGGCAGCAGgtgtgcaccc ... ttattcttagGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAA
EST: CTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTCAAGGCAGCAG GTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAAEST: gi|88470808|gb|CI408079.1|CI408079
genomic: CTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTCAAGGCAGCAGgtgtgcaccc ... ttattcttagGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAA
EST: CTTCTCCTCAAGGCAGCAG GTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAAEST: gi|18386218|gb|BM419417.1|BM419417
genomic: CTTCTCCTCAAGGCAGCAGgtgtgcaccc ... ttattcttagGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAA
EST: ACCCCTCCTGCCTCAGTCCTTCTCCTCAAGGCAGCAG GTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAAEST: gi|88962778|gb|CI023878.1|CI023878
genomic: ACCCCTCCTGCCTCAGTCCTTCTCCTCAAGGCAGCAGgtgtgcaccc ... ttattcttagGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAA
EST: CTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTCAAGGCAGCAG GTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAAEST: gi|88324214|gb|CI563825.1|CI563825
genomic: CTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTCAAGGCAGCAGgtgtgcaccc ... ttattcttagGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAA
EST: CTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTCAAGGCAGCAG GTATCGAGATAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAAEST: gi|86902910|gb|CI312287.1|CI312287
genomic: CTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTCAAGGCAGCAGgtgtgcaccc ... ttattcttagGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAA
EST: TTATNCTTGAAGACCCCTCCCTGCCTCAGTCCTTCTCCTCAAGGCAGCAG GTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAA
genomic: TTAT-CTTGAAGACCCCT-CCTGCCTCAGTCCTTCTCCTCAAGGCAGCAGgtgtgcaccc ... ttattcttagGTATCGAGAAAGGTTCAAAAGAACCGCAGCGAGAGAAGGTTGGAAAAGTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATAAAAGTTTCACCTTTATCTTGAAGACCCCTCCTGCCTCAGTCCTTCTCCTCAAGGCAGCAGgtgtgcacccttttagctagcatgaatctataattttgtttcgtccatgtattgaatttgcgatatgtttatacggttggacaaaataaaatgaaaacac
- - - - - - - - - - TTGAAG
- - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa