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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAGTGGCATGGAAGAAGCCCTGGAAATTCCGGTGCTCAATGATCTCACAATGGTTCTGGGCTCAATTGCACAAgtattggcctcttcattgtactataaaatgcttatatccacttgtacagttgtactgttatacacttcacgggtttgctatttgaaacttatgttctttcag

Basic information

species Oryza sativa
transcript LOC_Os03g02690.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88425281|gb|CI564798.1|CI564798
EST:     AAATTCCGGTGCTCAATGATCTCACAATGGTTCTGGGCTCAATTGCACAA                         ACCAGAGCAACTGGAGTGGTGGTTGATTTTAGTGAACCTTCAACTGTTTAT
genomic: AAATTCCGGTGCTCAATGATCTCACAATGGTTCTGGGCTCAATTGCACAAgtattggcct ... gttctttcagACCAGAGCAACTGGAGTGGTGGTTGATTTTAGTGAACCTTCAACTGTTTAT
EST: gi|27546884|gb|CA764989.2|CA764989
EST:     AAATTCCGGTGCTCAATGATCTCACAATGGTTCTGGGCTCAATTGCACAA                         ACCAGAGCAACTGGAGTGGTGGTTGATTTTAGTGAACCTTCAACTGTTTAT
genomic: AAATTCCGGTGCTCAATGATCTCACAATGGTTCTGGGCTCAATTGCACAAgtattggcct ... gttctttcagACCAGAGCAACTGGAGTGGTGGTTGATTTTAGTGAACCTTCAACTGTTTAT
EST: gi|58606567|gb|CK034600.1|CK034600
EST:     AAATTCCGGTGCTCAATGATCTCACAATGGTTCTGGGCTCAATTGCACAA                         ACCAGAGCAACTGGAGTGGTGGTTGATTTTAGTGAACCTTCAACTGTTTAT
genomic: AAATTCCGGTGCTCAATGATCTCACAATGGTTCTGGGCTCAATTGCACAAgtattggcct ... gttctttcagACCAGAGCAACTGGAGTGGTGGTTGATTTTAGTGAACCTTCAACTGTTTAT
EST: gi|29684781|gb|CB681056.1|CB681056
EST:     AAATTCCGGTGCTCAATGATCTCACAATGGTTCTGGGCTCAATTGCACAA                         ACCAGAGCAACTGGAGTGGTGGTTGATTTTAGTGAACCTTCAACTGTTTAT
genomic: AAATTCCGGTGCTCAATGATCTCACAATGGTTCTGGGCTCAATTGCACAAgtattggcct ... gttctttcagACCAGAGCAACTGGAGTGGTGGTTGATTTTAGTGAACCTTCAACTGTTTAT