1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGAGTACAAGATCCTCATGATCGGCCGCGTGCTCGGAGGAATCGCCACCTCGCTGCTCTTCTCGGCGTTCGAGTCATGGCTCGTCGCGGAGCACAACAAGgtactggacgctcacacatttcaagattctaccttcaaaacattttgacggatttttagtacaatatgaattaaattttacttgctaaaagttatattat...
species | Oryza sativa |
transcript | LOC_Os03g02380.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGCTGCTCTTCTCGGCGTTCGAGTCATGGCTCGTCGCGGAGCACAACAAG AGAGGTTTTGATTCACAATGGCTGTCGATCACATTCTCCAAGGCTATATTTEST: gi|40490542|gb|BX899979.1|BX899979
genomic: CGCTGCTCTTCTCGGCGTTCGAGTCATGGCTCGTCGCGGAGCACAACAAGgtactggacg ... cctttcacagAGAGGTTTTGATTCACAATGGCTGTCGATCACATTCTCCAAGGCTATATTT
EST: CGCTGCTCTTCTCGGCGTTCGAGTCATGGCTCGTCGCGGAGCACAACAAG AGAGGTTTTGATTCACAATGGCTGTCGATCACATTCTCCAAGGCTATATTTEST: gi|29656297|gb|CB652572.1|CB652572
genomic: CGCTGCTCTTCTCGGCGTTCGAGTCATGGCTCGTCGCGGAGCACAACAAGgtactggacg ... cctttcacagAGAGGTTTTGATTCACAATGGCTGTCGATCACATTCTCCAAGGCTATATTT
EST: CGCTGCTCTTCTCGGCGTTCGAGTCATGGCTCGTCGCGGAGCACAACAAG AGAGGTTTTGATTCACAATGGCTGTCGATCACATTCTCCAAGGCTATATTTEST: gi|29614295|gb|CB619308.1|CB619308
genomic: CGCTGCTCTTCTCGGCGTTCGAGTCATGGCTCGTCGCGGAGCACAACAAGgtactggacg ... cctttcacagAGAGGTTTTGATTCACAATGGCTGTCGATCACATTCTCCAAGGCTATATTT
EST: CGCTGCTCTTCTCGGCGTTCGAGTCATGGCTCGTCGCGGAGCACAACAAG AGAGGTTTTGATTCACAATGGCTGTCGATCACATTCTCCAAGGCTATATTTEST: gi|58672276|gb|CK060962.1|CK060962
genomic: CGCTGCTCTTCTCGGCGTTCGAGTCATGGCTCGTCGCGGAGCACAACAAGgtactggacg ... cctttcacagAGAGGTTTTGATTCACAATGGCTGTCGATCACATTCTCCAAGGCTATATTT
EST: CGCTGCTCTTCTCGGCGTTCGAGTCATGGCTCGTCGCGGAGCACAACAAG AGAGGTTTTGATTCACAATGGCTGTCGATCACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCGGCGTTCGAGTCATGGCTCGTCGCGGAGCACAACAAGgtactggacg ... cctttcacagAGAGGTTTTGATTCACAATGGCTGTCGATCACATTCTCCAAGGCTATATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGTACAAGATCCTCATGATCGGCCGCGTGCTCGGAGGAATCGCCACCTCGCTGCTCTTCTCGGCGTTCGAGTCATGGCTCGTCGCGGAGCACAACAAGgtactggacgctcacacatttcaagattctaccttcaaaacattttgacggatttttagtacaatatgaattaaattttacttgctaaaagttatattat
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA