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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAGAACATCAAGGAGGTTTGGGATGTCTTGCAAGCTGGAAGCAATGCAAGGGCTGTAGGATCAAACAATGTGAATGAGCACAGCAGTCGCTCCCACTGgttggtcaaaattttattattattcttttcttttctagagtacttgcttctggtcaaaatgttttgacctttatatctgtacctcag

Basic information

species Oryza sativa
transcript LOC_Os03g02290.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02290.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G092232_T01 (Zea mays), 5'ss of exon 9
TTGAGAACATCAAGGAGGTTTGGGATGTCTTGCAAGCTGGAAGCAATGCAAGGGCTGTAGGATCAAACAATGTGAATGAGCACAGCAGTCGCTCCCACTGgttggtcaaaattttattat--tattcttttcttttc-tagagtacttgcttctggtcaaaatgttttgacctttatatctgtacctcag-----------
|||||||||| || ||||||||| | || |||||| |||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| ||   ||||  |||  ||| ||||| | ||| | |  |  ||||||   ||| ||||| ||   | |||| |||| ||    |            
TTGAGAACATAAATGAGGTTTGGAAAGTTTTGCAAACTGGAAGCAATGCAAGGGCTGTTGGTTCAAACAATGTTAATGAGCACAGCAGTCGCTCCCACTGgttggacactgttttcatataatatccttttttattcgttggctgattgcttgatgtccaaatggttcttctttta-atctttattataacttttcttcag

upper sequence: LOC_Os03g02290.2 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv18s0001g07800.t01 (Vitis vinifera), 5'ss of exon 9
TTGAGAACATCAAGGAGGTTTGGGATGTCTTGCAAGCTGGAAGCAATGCAAGGGCTGTAGGATCAAACAATGTGAATGAGCACAGCAGTCGCTCCCACTGgttggtcaaaattttatta--ttattcttttcttttctagagtacttgcttctggtcaaaatgttttgacctttatatctgtacctcag------------
|||||||||| |||||||| ||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || || |||||||||||      |   | |  |  | ||| ||||||| |        ||    | |  |   | | || | |  | |  ||||||  ||  |            
TTGAGAACATTAAGGAGGTCTGGGATGTTCTGCAAGCTGGAAGCAATGGAAGGGCTGTAGGATCAAACAATGTGAATGAACACAGTAGCCGATCCCACTGgttatcatcagcctcagcaaatcattattttcttatgagtcaatctaatctttaatttcattattgttaaatctg-atctgtttctttgaacaataaggac

upper sequence: LOC_Os03g02290.2 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv00s0218g00050.t01 (Vitis vinifera), 5'ss of exon 11
TTGAGAACATCAAGGAGGTTTGGGATGTCTTGCAAGCTGGAAGCAATGCAAGGGCTGTAGGATCAAACAATGTGAATGAGCACAGCAGTCGCTCCCACTGgttggtcaaaattttattattattcttttcttttctagagtacttgcttctggtcaaaatgttttgacctttatatctgtacctcag-----
| |||||||| || || || ||| | ||| |||| |||||||||||||| ||||| || ||||| || || ||||||||||||||||| || || |||||||   ||||  |   |  |   |||| || | |  |    || |         |  | | ||| |||     || ||   |  |  |     
TGGAGAACATTAAAGAAGTCTGGAAAGTCCTGCAGGCTGGAAGCAATGCTAGGGCAGTTGGATCCAATAACGTGAATGAGCACAGCAGCCGATCACACTGgt-attcaacttcccaaaagctttctcttttctgtttccttattcatcatattttgataagttgtgaataaaatttcaccaattttgttcag