1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTGGCCAAGGAGGTGGTGAGGTCCAGGAAGGCGGTCAACCGCCTCTACGAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGgtaacgaatcacctctcatatattatatctcctcacacacacccatcgtccttatgcccaactgtttgagaatccaatcccccattttgcaatgcgcttg...
species | Oryza sativa |
transcript | LOC_Os03g01810.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAG CTACTGCCAGGACTGTTGGCCATTTATCCAAGAGTACTGAGGTGATGAAACEST: gi|95101417|gb|CI693165.1|CI693165
genomic: GAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGgtaacgaatc ... cacctttcagCTACTGCCAGGACTGTTGGCCATTTATCCAAGAGTACTGAGGTGATGAAAC
EST: GAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAG CTACTGCCAGGACEST: gi|88310672|gb|CI672535.1|CI672535
genomic: GAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGgtaacgaatc ... cacctttcagCTACTGCCAGGAC
EST: GAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAG CTACTGCCAGGACTGTTGGCCATTTATCCAAGAGTACTGAGGTGATGAAACEST: gi|27576250|gb|CA998944.1|CA998944
genomic: GAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGgtaacgaatc ... cacctttcagCTACTGCCAGGACTGTTGGCCATTTATCCAAGAGTACTGAGGTGATGAAAC
EST: GAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAG CTACTGCCAGGACTGTTGGCCATTTATCCAAEST: gi|58686936|gb|CK075623.1|CK075623
genomic: GAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGgtaacgaatc ... cacctttcagCTACTGCCAGGACTGTTGGCCATTTATCCAA
EST: GAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAG CTACTGCCAGGACTGTTGGCCATTTATCCAAGAGTACTGAGGTGATGAAACEST: gi|88587132|gb|CI704860.1|CI704860
genomic: GAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGgtaacgaatc ... cacctttcagCTACTGCCAGGACTGTTGGCCATTTATCCAAGAGTACTGAGGTGATGAAAC
EST: GAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAG CTACTGCCAGGAEST: gi|88382928|gb|CI683023.1|CI683023
genomic: GAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGgtaacgaatc ... cacctttcagCTACTGCCAGGA
EST: GAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAG CTACTGCCAGGACTGTTGGCCATTTATCCAAGAGTACTGEST: gi|88408489|gb|CI685983.1|CI685983
genomic: GAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGgtaacgaatc ... cacctttcagCTACTGCCAGGACTGTTGGCCATTTATCCAAGAGTACTG
EST: GAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAG CTACTGCCAGGACTGTTGGCCATTTATCCAAGGAGTACEST: gi|112785790|gb|EE591423.1|EE591423
genomic: GAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGgtaacgaatc ... cacctttcagCTACTGCCAGGACTGTTGGCCATTTATCCAAG-AGTAC
EST: GAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAG CTACTGCCAGGACTGTTGGCCATTTATCCAAGAGTACTGAGGTGATGAAACEST: gi|33666695|gb|CF297662.1|CF297662
genomic: GAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGgtaacgaatc ... cacctttcagCTACTGCCAGGACTGTTGGCCATTTATCCAAGAGTACTGAGGTGATGAAAC
EST: GAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAG CTACTGCCAGGACTGTTGGCCATTTATCCAAGAGTACTGAGGTGATGAAACEST: gi|88580269|gb|CI697183.1|CI697183
genomic: GAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGgtaacgaatc ... cacctttcagCTACTGCCAGGACTGTTGGCCATTTATCCAAGAGTACTGAGGTGATGAAAC
EST: GAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAG CTACTGCCAGGACTGTTGGCCATTTATCC
genomic: GAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGgtaacgaatc ... cacctttcagCTACTGCCAGGACTGTTGGCCATTTATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGCCAAGGAGGTGGTGAGGTCCAGGAAGGCGGTCAACCGCCTCTACGAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGgtaacgaatcacctctcatatattatatctcctcacacacacccatcgtccttatgcccaactgtttgagaatccaatcccccattttgcaatgcgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atccccc