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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACCgtaagcattcccttcacctgcatatgaattgatctacccgagattagaggcagttaactcgtcaaatccccgacaataataattatcatatgatagaatccgctgcagtgcagcctgcatgtttcaccccattgtgtaaaccttgtcctgtaaacattccag

Basic information

species Oryza sativa
transcript LOC_Os03g01750.6
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g01750.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G052546_T04 (Zea mays), 5'ss of exon 1
ACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACCgtaagcatt--cccttcacctgcatatgaattgatctacccgagattagaggcagttaactcgtcaaatccccgacaataataattatcatatgatagaatccgctgcagtgcagcctgcatgtttcaccccattgtgtaaaccttgtcctgtaaacattccag
   ||||| || ||||| ||||||||||||||||| |||||||| |||||||||  |||  ||||| | |       ||| |      ||  |  || | |    || |||   | | ||  ||||    |  |    ||||||  | |  ||||                                                      
---ATGGTCCGCGGCGGCAGTCGCCGATCAAACACCGTCAAAACTgtaagcattagccccccacct-cgtcgtttccgatttcattccgac-aacggaaatcttatcctca---cactgaggataaggtgtccc----gatagaggctg--gcagg-----------------------------------------------------

upper sequence: LOC_Os03g01750.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G052546_T01 (Zea mays), 5'ss of exon 3
ACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACCgtaagcatt--cccttcacctgcatatgaattgatctacccgagattagaggcagttaactcgtcaaatccccgacaataataattatcatatgatagaatccgctgcagtgcagcctgcatgtttcaccccattgtgtaaaccttgtcctgtaaacattccag
 ||||||| || ||||| ||||||||||||||||| |||||||| |||||||||  |||  ||||| | |       ||| |      ||  |  || | |    || |||   | | ||  ||||    |  |    ||||||  | |  ||||                                                      
GCGATGGTCCGCGGCGGCAGTCGCCGATCAAACACCGTCAAAACTgtaagcattagccccccacct-cgtcgtttccgatttcattccgac-aacggaaatcttatcctca---cactgaggataaggtgtccc----gatagaggctg--gcagg-----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29640152|gb|CB645161.1|CB645161
EST:     ACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACC                         GCATCCGGGGCGTCTACTTCTAGCGCCGAGAGTGGCGCAGTGGAGGCGGGC
genomic: ACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACCgtaagcattc ... aacattccagGCATCCGGGGCGTCTACTTCTAGCGCCGAGAGTGGCGCAGTGGAGGCGGGC
EST: gi|29680013|gb|CB676288.1|CB676288
EST:     ACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACC                         GCATCCGGGGCGTCTACTTCTAGCGCCGAGAGTGGCGCAGTGGAGGCGGGC
genomic: ACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACCgtaagcattc ... aacattccagGCATCCGGGGCGTCTACTTCTAGCGCCGAGAGTGGCGCAGTGGAGGCGGGC
EST: gi|29641485|gb|CB646492.1|CB646492
EST:     ACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACC                         GCATCCGGGGCGTCTACTTCTAGCGCCCAGAGTGGCGCAGTGGAGGCGGGC
genomic: ACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACCgtaagcattc ... aacattccagGCATCCGGGGCGTCTACTTCTAGCGCCGAGAGTGGCGCAGTGGAGGCGGGC