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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTAGGGATATCCATATGGAGAACTTCAGTGTTACTGTTGGTGGTCGTGATCTCATTCAAGATTGCACTGTAACACTTGCTTTTGGGAGGCACTATGgtgagttacagcataggtttcttcttgagctgttgttcacttcgtagctggcatgaataacttaggaatgaagaatgaaacatttgtaatcgtatatgtc...

Basic information

species Oryza sativa
transcript LOC_Os02g58020.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g58020.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G013890_T01 (Zea mays), 5'ss of exon 3
GCTGTTAGGGATATCCATATGGAGAACTTCAGTGTTACTGTTGGTGGTCGTGATCTCATTCAAGATTGCACTGTAACACTTGCTTTTGGGAGGCACTATGgtgagttacagcatag-gtttcttcttgagctgttgttcacttcgtagctgg--catgaataacttaggaatgaagaatg-----aaacatttgtaatcgtatatgtc-----------------------------------------------
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||   |||| ||||||||||||||||||||||||||||||||| ||    | | ||||  |  |   | || | | |    || || ||  | ||   | |||     |  ||  |      | | || | |||  || |  ||                                                
GCTGTTAGGGATATACATATGGAGAACTTCAGTGTCACTGTTGGTGGTCGTGATCTAATTCAAGAAGCCACTATAACACTTGCTTTTGGGAGGCACTATGgtgagt-actctgtggtgtttggtagttttcagtagataaaactgtggccggggcctgggaagcttgcatgttcagtttatttatacatatctataaaagttttcgttgaaatgctaccctacaagttttggaatttcttatttacttgtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29623430|gb|CB628441.1|CB628441
EST:     TGATCTCATTCAAGATTGCACTGTAACACTTGCTTTTGGGAGGCACTATG                         GTCTTGTTGGAAGAAATGGTACAGGGAAAACCTCTTTTCTCAGAGCTATGG
genomic: TGATCTCATTCAAGATTGCACTGTAACACTTGCTTTTGGGAGGCACTATGgtgagttaca ... cacacttcagGTCTTGTTGGAAGAAATGGTACAGGGAAAACCTCTTTTCTCAGAGCTATGG
EST: gi|157651259|gb|EX450893.1|EX450893
EST:     TGATCTCATTCAAGATTGCACTGTAACACTTGCTTTTGGGAGGCACTATG                         GTCTTGTTGGAAGAAATGGTAC
genomic: TGATCTCATTCAAGATTGCACTGTAACACTTGCTTTTGGGAGGCACTATGgtgagttaca ... cacacttcagGTCTTGTTGGAAGAAATGGTAC
EST: gi|29664091|gb|CB660366.1|CB660366
EST:     TGATCTCATTCAAGATTGCACTGTAACACTTGCTTTTGGGAGGCACTATG                         GTCTTGTTGGAAGAAATGGTACAGGGAAAACCTCTTTTCTCAGAGCTATGG
genomic: TGATCTCATTCAAGATTGCACTGTAACACTTGCTTTTGGGAGGCACTATGgtgagttaca ... cacacttcagGTCTTGTTGGAAGAAATGGTACAGGGAAAACCTCTTTTCTCAGAGCTATGG
EST: gi|29644366|gb|CB649373.1|CB649373
EST:     TGATCTCATTCAAGATTGCACTGTAACACTTGCTTTTGGGAGGCACTATG                         GTCTTGTTGGAAGAAATGGTACAGGGAAAACCTCTTTTCTCAGAGCTATGG
genomic: TGATCTCATTCAAGATTGCACTGTAACACTTGCTTTTGGGAGGCACTATGgtgagttaca ... cacacttcagGTCTTGTTGGAAGAAATGGTACAGGGAAAACCTCTTTTCTCAGAGCTATGG
EST: gi|66915780|gb|CX102628.1|CX102628
EST:     TGATCTCATTCAAGATTGCACTGTAACACTTGCTTTTGGGAGGCACTATG                         GTCTTGTTGGA
genomic: TGATCTCATTCAAGATTGCACTGTAACACTTGCTTTTGGGAGGCACTATGgtgagttaca ... cacacttcagGTCTTGTTGGA
EST: gi|29627492|gb|CB632503.1|CB632503
EST:     TGATCTCATTCAAGATTGCACTGTAACACTTGCTTTTGGGAGGCACTATG                         GTCTTGTTGGAAGAAATGGTACAGGGAAAACCTCTTTTCTCAGAGCTATGG
genomic: TGATCTCATTCAAGATTGCACTGTAACACTTGCTTTTGGGAGGCACTATGgtgagttaca ... cacacttcagGTCTTGTTGGAAGAAATGGTACAGGGAAAACCTCTTTTCTCAGAGCTATGG
EST: gi|117239285|gb|CT849366.1|CT849366
EST:     TGATCTCATTCAAGATTGCACTGTAACACTTGCTTTTGGGAGGCACTATG                         GTCTTGTTGGAAGAAATGGTACAGGGAAAACCTCTTTTCTCAGAGCTATGG
genomic: TGATCTCATTCAAGATTGCACTGTAACACTTGCTTTTGGGAGGCACTATGgtgagttaca ... cacacttcagGTCTTGTTGGAAGAAATGGTACAGGGAAAACCTCTTTTCTCAGAGCTATGG
EST: gi|157651253|gb|EX450887.1|EX450887
EST:     TGATCTCATTCAAGATTGCACTGTAACACTTGCTTTTGGGAGGCACTATG                         GTCTTGTTGGAAGAAATGGTAC
genomic: TGATCTCATTCAAGATTGCACTGTAACACTTGCTTTTGGGAGGCACTATGgtgagttaca ... cacacttcagGTCTTGTTGGAAGAAATGGTAC