ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

CACGACCAAGACCAAGAAGCAGAATGCCCCAGCTAAGCTCTACCACAAGTCTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaagataaatgcttagtttcatgtcattattttgccttgtgatgctctatgctttagatgcactgttgtgatgagccttaatatctcgtattg...

Basic information

species	Oryza sativa
transcript	LOC_Os02g57540.1
intron #	3
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: LOC_Os02g57540.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G088060_T04 (Zea mays), 5'ss of exon 3

CACGACCAAGACCAAGAAGCAGAATGCCCCAGCTAAGCTCTACCACAAGTCTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttgga-agataaatgcttagtttcatgtcattattttgcct-tgtga-tgctctatgctttagatgcactgttgtgatgagccttaatatctcgtattg
 || ||||||||||||||||||||  | || || ||||||  |||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||| | | | |   |||||| || | |  ||||  |||   |  | ||||| ||||   |    || ||  ||||        |||  |    |   ||  ||
TACTACCAAGACCAAGAAGCAGAACACACCCGCGAAGCTCAGCCACAAGTCTGTAATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtagtggcacatggaaatgcataatgtt-tgtctctatgggggatatgtgagtgcttgttatgctacat--actgcaagacatagctcttgctttatgtgctg

upper sequence: LOC_Os02g57540.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G394827_T02 (Zea mays), 5'ss of exon 3

CACGACCAAGACCAAGAAGCAGAATGCCCCAGCTAAGCTCTACCACAAGTCTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaagataaatgcttagtttcatgtcattattttgccttgtgatgctctatgctttagatgcactgttgtgatgagccttaatatctcg--tattg-
 || |||||||||||||||||||| || || || ||||||  ||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| |  | | ||  |  |  | ||     | ||| |   |   | ||    | | || ||| | | |     || |  |    || || | | |  ||||| 
TACTACCAAGACCAAGAAGCAGAACGCACCTGCGAAGCTCAGCCACAAGTCTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtact-agcacatggaatcaca-ttatgcttgattgtacggtaatatggcagtgtttgtttt-gctactgcaatgcgtggcttttttatgtattggatattgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|88320649|gb|CI525591.1|CI525591

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAANG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAA--

EST: gi|88901753|gb|CI001861.1|CI001861

EST:     CTGTGATGCGCAAGGAGTTTCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88443965|gb|CI552510.1|CI552510

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAANTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88283285|gb|CI404731.1|CI404731

EST:     CTGTAATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88391584|gb|CI600773.1|CI600773

EST:     CTGTGATGCGCAAGGAGTTC-GCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACT
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACT

EST: gi|88988500|gb|CI037737.1|CI037737

EST:     GATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACNACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: GATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88326143|gb|CI651198.1|CI651198

EST:     CTGTGATGCGCAAGGAGTTCCGNAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACT
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACT

EST: gi|88732363|gb|CI755540.1|CI755540

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCG

EST: gi|88423130|gb|CI613431.1|CI613431

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAAC
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAAC

EST: gi|88468468|gb|CI514950.1|CI514950

EST:     TGTGATGCGGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTANTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: TGTGATGC-GCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|86522046|gb|CI162252.1|CI162252

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88419913|gb|CI516362.1|CI516362

EST:     AAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: AAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88487396|gb|CI424667.1|CI424667

EST:     CAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88982246|gb|CI027823.1|CI027823

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|58603959|gb|CK014487.1|CK014487

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAGCCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88375076|gb|CI523341.1|CI523341

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88416452|gb|CI540993.1|CI540993

EST:     AAGGAGTTCCGCAAGATGACTAAGGCTGTCAAGAACCAG                         GTTAGTNACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: AAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88436114|gb|CI516650.1|CI516650

EST:     TCCGCAAGATGGGTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: TCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|8527907|gb|AU092722.1|AU092722

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88303983|gb|CI513057.1|CI513057

EST:     CAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88416820|gb|CI546099.1|CI546099

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAANTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88482514|gb|CI419785.1|CI419785

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTAGTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88216841|gb|CI216443.1|CI216443

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88308139|gb|CI647966.1|CI647966

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGA
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGA

EST: gi|88212593|gb|CI212233.1|CI212233

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|325494031|gb|JG458555.1|JG458555

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAGCCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|86836066|gb|CI346138.1|CI346138

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88349800|gb|CI634335.1|CI634335

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGA
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGA

EST: gi|89177587|gb|CI390766.1|CI390766

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88988453|gb|CI037690.1|CI037690

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88252746|gb|CI351174.1|CI351174

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|89177759|gb|CI390938.1|CI390938

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|29686357|gb|CB682632.1|CB682632

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|29640294|gb|CB645303.1|CB645303

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88257035|gb|CI359423.1|CI359423

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|86861462|gb|CI328166.1|CI328166

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88482496|gb|CI419767.1|CI419767

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|86889689|gb|CI299887.1|CI299887

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88983091|gb|CI020655.1|CI020655

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCGAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|3767101|gb|AU031211.1|AU031211

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88324787|gb|CI657659.1|CI657659

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACC
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACC

EST: gi|33655117|gb|CF277731.1|CF277731

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88963485|gb|CI029292.1|CI029292

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|33795640|gb|CF323690.1|CF323690

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|29640295|gb|CB645304.1|CB645304

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|33810633|gb|CF331203.1|CF331203

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|117251389|gb|CT844143.1|CT844143

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAGCCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88291703|gb|CI539874.1|CI539874

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88456009|gb|CI526825.1|CI526825

EST:     CGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|218500537|gb|FG947087.1|FG947087

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAGCCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|58594577|gb|CF992885.1|CF992885

EST:     CTGTGATGCGCAAGGAGTTCCGGAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGA
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGA

EST: gi|88506890|gb|CI434396.1|CI434396

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88311934|gb|CI577540.1|CI577540

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGC
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGC

EST: gi|88468410|gb|CI514892.1|CI514892

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88970504|gb|CI384006.1|CI384006

EST:     CTTTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88252588|gb|CI351016.1|CI351016

EST:     CTCTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88406482|gb|CI598975.1|CI598975

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTAC
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTAC

EST: gi|33810635|gb|CF331204.1|CF331204

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|86835125|gb|CI346600.1|CI346600

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|33660300|gb|CF291267.1|CF291267

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAGCCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|218498720|gb|FG963989.1|FG963989

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAGCCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88420082|gb|CI513763.1|CI513763

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|163919930|gb|EG711500.1|EG711500

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88328097|gb|CI649899.1|CI649899

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|15848912|gb|BI797188.1|BI797188

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAGCCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88400238|gb|CI590928.1|CI590928

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGGCTCT
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGG-CTCT

EST: gi|33655118|gb|CF277732.1|CF277732

EST:     TGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: TGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88269448|gb|CI380746.1|CI380746

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAATCCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

EST: gi|88399265|gb|CI618455.1|CI618455

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAAC-AG                         GTTAGTGACAACTACTACAGGC-AGATCTGACCAAAC
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAAC

EST: gi|87030562|gb|CI254991.1|CI254991

EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGGACCAG                         GTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGG

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 1 RNA-Seqlibrary.

Block sizes: 75 (upstream exon), 58 (downstream exon)
Score: 16

CACGACCAAGACCAAGAAGCAGAATGCCCCAGCTAAGCTCTACCACAAGTCTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaa ... ttctgcgcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGGCTTAGCTCAGTGTACCGCAGCCTCCAGGTTGCCAAGTCTGGTGTGAAGA

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Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACGACCAAGACCAAGAAGCAGAATGCCCCAGCTAAGCTCTACCACAAGTCTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaagataaatgcttagtttcatgtcattattttgccttgtgatgctctatgctttagatgcactgttgtgatgagccttaatatctcgtattg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC