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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGATGAGTGTAGATGATACACTGATGTGCTCTTTTCAAATACTAAAACCAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataactagtagtatgcaagtgacagatatttttattatttatacaatatatagcgattccctgcagtgtcccttccaaaaaaaagggacatgct...

Basic information

species Oryza sativa
transcript LOC_Os02g57450.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g57450.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G112240_T01 (Zea mays), 5'ss of exon 3
CATGATGAGTGTAGATGATACACTGATGTGCTCTTTTCAAATACTAAAACCAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataactagtagtatgcaagtgacagatatttttattattta-tacaatatatagc-------gattccctgcagtgtcccttccaaaaaaaagggacatgct
|||||||||||||||||||||| |||||||||| || |||||| | || || || ||||| ||| |||||||||| || |||  |||||| ||||||||||||||||| | ||     ||| |||      ||||   |   ||  |  || |||| | ||        |||   ||     | || ||   | | |||   |     
CATGATGAGTGTAGATGATACATTGATGTGCTCGTTCCAAATATTGAAGCCTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatgattaac---atggaagcagtttatatcagtcggataaaacacgatatgttgccctacaaaattgtttggtccctaccctctggatacaagtagc-----

upper sequence: LOC_Os02g57450.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G390076_T03 (Zea mays), 5'ss of exon 3
CATGATGAGTGTAGATGATACACTGATGTGCTCTTTTCAAATACTAAAACCAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataactagta-gtatgcaagtgacagatatttttattatttatacaatatatagcgattccctgcagt---gtcccttccaaaaaaaagggacatgct
|||||||||||||||||| ||| |||||||||| || |||||||| ||||| ||||||||  ||||||||||||| || |||  |||||| ||||||||||||| ||| | ||  | | |  |   | | |  |||  |  |  ||   ||||| | | |   |        ||   |||||||||    | ||  ||      
CATGATGAGTGTAGATGAGACATTGATGTGCTCCTTCCAAATACTGAAACCTGCGAGGAAGGTGTTGGGTGGTTCAACTAATAACAAATCAGGCTTCAAGgtatacatcattaacatgaaaactgtttatatgtatcat-gtagttagcacaatttgttgtcctataaaaatgtttggtcccttccctctagaaatgatta---

upper sequence: LOC_Os02g57450.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G390076_T02 (Zea mays), 5'ss of exon 3
---CATGATGAGTGTAGATGATACACTGATGTGCTCTTTTCAAATACTAAAACCAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataactagta-gtatgcaagtgacagatatttttattatttatacaatatatagcgattccctgcagt---gtcccttccaaaaaaaagggacatgct
   |||||||||||||||||| ||| |||||||||| || |||||||| ||||| ||||||||  ||||||||||||| || |||  |||||| ||||||||||||| ||| | ||  | | |  |   | | |  |||  |  |  ||   ||||| | | |   |        ||   |||||||||    | ||  ||      
TGCCATGATGAGTGTAGATGAGACATTGATGTGCTCCTTCCAAATACTGAAACCTGCGAGGAAGGTGTTGGGTGGTTCAACTAATAACAAATCAGGCTTCaaggtatacatcattaacatgaaaactgtttatatgtatcat-gtagttagcacaatttgttgtcctataaaaatgtttggtcccttccctctagaaatga------

upper sequence: LOC_Os02g57450.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA10G00960.1 (Glycine max), 5'ss of exon 3
----------------------------CATGATGAGTGTAGATGATACACTGATGTGCTCTTTTCAAATACTAAAACCAGCGAG-----GAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataactagtagtatgcaagtgacagatatttttattatttatacaatatatagcgattccctgcagtgtcccttccaaaaaaaagggacatgct
                             ||||||||||| ||||| ||||| |||||||||||||| |||||||  || |||       ||||   |  | | | |    | |   |||| |    |||||||   | |   |||  |      ||      | ||||||  || || |  | | |  | || ||         |                           
ACTGTGGAGAATTTGACAATGCTGGAGCAATGATGAGTGTTGATGAGACACTCATGTGCTCTTTTCAGATACTAAGGCCTGCGGAACACAGAAAGCCTAAgtttgcttttgggag--caaaactacattcaaggctagtacttctaaca------aaaatcttggtattttagttcttgaatccagaatttgcaatgataaatgattg-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88466017|gb|CI519890.1|CI519890
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|86870833|gb|CI326664.1|CI326664
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|88267059|gb|CI378994.1|CI378994
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|88458026|gb|CI542208.1|CI542208
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|88276714|gb|CI397516.1|CI397516
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|29638487|gb|CB643496.1|CB643496
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|88408908|gb|CI554230.1|CI554230
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGTTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|88842480|gb|CI081736.1|CI081736
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|3767771|gb|AU031798.1|AU031798
EST:     AGCGAGGAAAATGTTGGGNTGGTTCCACGANTTCCAAATCCGGCTTCAAT                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: AGCGAGGAAAATGTTGGG-TGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|88255034|gb|CI353858.1|CI353858
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|29677282|gb|CB673557.1|CB673557
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|88366175|gb|CI551007.1|CI551007
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|29686274|gb|CB682549.1|CB682549
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|86600410|gb|CI356167.1|CI356167
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|29638530|gb|CB643539.1|CB643539
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|86418445|gb|CI032654.1|CI032654
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|29686275|gb|CB682550.1|CB682550
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|88445705|gb|CI546842.1|CI546842
EST:     GGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: GGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|87032028|gb|CI362108.1|CI362108
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|88424995|gb|CI562310.1|CI562310
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGTTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|88214428|gb|CI214277.1|CI214277
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|88289671|gb|CI522804.1|CI522804
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATGTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|88277079|gb|CI397881.1|CI397881
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGC
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGA-GGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGC
EST: gi|88960909|gb|CI382590.1|CI382590
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|89168491|gb|CI038845.1|CI038845
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|3768409|gb|AU032436.1|AU032436
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACG-ATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGAATCTGCTGGC
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTG-ATCTGCTGGC
EST: gi|88295161|gb|CI525314.1|CI525314
EST:     ATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: ATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|86884756|gb|CI313135.1|CI313135
EST:     CAGCGAGGAAAATGTTGGCTGTTTCCACGAATTCCAAATCCGGCTTCAAG                         TCAGCTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGC
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCA-CTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGC
EST: gi|88273122|gb|CI388578.1|CI388578
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|15852245|gb|BI805041.1|BI805041
EST:     AGCGAGGAAAATGTTGGGTGGTTCCCACGAATTCCCAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCCAAGCTGTGATCTGATCTGCTGGCG
genomic: AGCGAGGAAAATGTTGGGTGGTT-CCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|86884792|gb|CI314368.1|CI314368
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGCTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|88255206|gb|CI354030.1|CI354030
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|88431880|gb|CI560125.1|CI560125
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|88416634|gb|CI543535.1|CI543535
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|86528458|gb|CI168664.1|CI168664
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|88459143|gb|CI514424.1|CI514424
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|88449683|gb|CI539058.1|CI539058
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|86429650|gb|CI076331.1|CI076331
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAC                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|86436086|gb|CI117808.1|CI117808
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|86534891|gb|CI175097.1|CI175097
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
EST: gi|88841216|gb|CI080670.1|CI080670
EST:     CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAG                         TCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG
genomic: CAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataa ... gtttgattagTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGTGATCTGATCTGCTGGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATGATGAGTGTAGATGATACACTGATGTGCTCTTTTCAAATACTAAAACCAGCGAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGgtatgcataactagtagtatgcaagtgacagatatttttattatttatacaatatatagcgattccctgcagtgtcccttccaaaaaaaagggacatgct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa