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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTTCTAGGGAGAAGTTCCTAAGTGTTGTATGTGATGCCCTCTCTTCATACAAGTATGTGGGGCCAAACCAGAAGGCTGACTTTCTTCTTGCTTGCAGgtaacatgtttttccttgtttctgcatttataaattcagaagttacaatgagttaccaatcatcagttcattacagccaatggaaagctacctgaatgcattgaaataacaatggttttgtgcaactgtgcattttccaattgttctgttcag

Basic information

species Oryza sativa
transcript LOC_Os02g57400.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g57400.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G123544_T01 (Zea mays), 5'ss of exon 2
TTGTTTCTAGGGAGAAGTTCCTAAGTGTTGTATGTGATGCCCTCTCTTCATACAAGTATGTGGGGCCAAACCAGAAGGCTGACTTTCTTCTTGCTTGCAGgtaacatgtttttccttgtttctgcatttataaattcagaagttacaatgagttaccaatcatcagttcattacagccaatggaaagctacctgaatgcattgaaataacaatggttttgtgcaactgtgcattttccaattgttctgttcag
|| | || || ||| ||||  ||||||||||||| |||||||||||||  ||||||||||| || || |||||||| || ||| | || || |||||||||||| ||    || ||| |  ||| |||| | ||| |  | |     |   | || ||   ||| || ||||  |  ||   |      || | |||                                                        
TTATCTCAAGAGAGGAGTTTGTAAGTGTTGTATGCGATGCCCTCTCTTTGTACAAGTATGTTGGACCCAACCAGAAAGCAGACCTGCTCCTCGCTTGCAGgtaaaataaacttgcttatcactgtatttcttaatccgcacgaatttaaacgataacatatatctgtccatttaatgcacatgtccatcacatcaatttc-----------------------------------------------------

upper sequence: LOC_Os02g57400.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G342327_T01 (Zea mays), 5'ss of exon 2
TTGTTTCTAGGGAGAAGTTCCTAAGTGTTGTATGTGATGCCCTCTCTTCATACAAGTATGTGGGGCCAAACCAGAAGGCTGACTTTCTTCTTGCTTGCAGgtaacatgtttttccttgtttctgcatttataaattcagaagttacaatgagttaccaatcatcagttcattacagccaatggaaagctacctgaatgcattgaaataacaatggttttgtgcaactgtgcattttccaattgttctgttcag
||||||| || ||| ||||  |||||||||||||||||||||||||||  ||||||||||| || || |||||||| |||||| | |||||||||||||||||| |    || | || |  ||| ||||||   | ||     | ||   |   | ||  ||||| ||    |       | |  | |   ||  | ||                                                      
TTGTTTCAAGAGAGGAGTTTGTAAGTGTTGTATGTGATGCCCTCTCTTTGTACAAGTATGTTGGACCCAACCAGAAAGCTGACCTGCTTCTTGCTTGCAGgtaaaacagcttgc-ttatcgctgtatttatctgtccatttaatgcacatatccatca--catcaattt-ccatgcatgtttggcatccctctttaagcgaaag-------------------------------------------------