1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACTgtaaggattgctgtcctttgatttcccctgaatcttattgcttgcttttcacatttctttgcaactatttgggaaccaacttttgcttatttattatatt...
species | Oryza sativa |
transcript | LOC_Os02g55770.5 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGCACTGACTGGTTCCTTATATGATTTTGGGTTTGAAGATTATCTTAACT AAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGAGGCCEST: gi|88718299|gb|CI741388.1|CI741388
genomic: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACTgtaaggattg ... acttataaagAAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGAGGCC
EST: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACT AAGAA-AAA--TAAGGATTCAAGCAEST: gi|88577142|gb|CI673698.1|CI673698
genomic: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACTgtaaggattg ... acttataaagAAGAAGAAAAATAAGGATTCAAGCA
EST: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACT AAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGAGGCCEST: gi|88355497|gb|CI679216.1|CI679216
genomic: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACTgtaaggattg ... acttataaagAAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGAGGCC
EST: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACT AAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGAGGCCEST: gi|88392100|gb|CI683931.1|CI683931
genomic: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACTgtaaggattg ... acttataaagAAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGAGGCC
EST: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACT AAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGG-AGGCCEST: gi|88720299|gb|CI743598.1|CI743598
genomic: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACTgtaaggattg ... acttataaagAAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGAGGCC
EST: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACT AAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCACCCGGCGAGGGAGGCCEST: gi|88580382|gb|CI697306.1|CI697306
genomic: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACTgtaaggattg ... acttataaagAAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGAGGCC
EST: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACT AAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGAEST: gi|88355496|gb|CI679215.1|CI679215
genomic: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACTgtaaggattg ... acttataaagAAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGA
EST: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACT AAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGAGGCCEST: gi|88458095|gb|CI695047.1|CI695047
genomic: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACTgtaaggattg ... acttataaagAAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGAGGCC
EST: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACT AAGAAGAAAAATAAGGATTCAAGCACCAACAAGCAGCCGGCGAGG-AGGCEST: gi|88301009|gb|CI592189.1|CI592189
genomic: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACTgtaaggattg ... acttataaagAAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGAGGC
EST: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACT AAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCEST: gi|88390036|gb|CI590549.1|CI590549
genomic: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACTgtaaggattg ... acttataaagAAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGC
EST: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACT AAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGGCGGCGAGGGAGEST: gi|88340704|gb|CI647582.1|CI647582
genomic: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACTgtaaggattg ... acttataaagAAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGAG
EST: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACT AAGAAGAAAAATAAGGATTCAAGCEST: gi|88742052|gb|CI765560.1|CI765560
genomic: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACTgtaaggattg ... acttataaagAAGAAGAAAAATAAGGATTCAAGC
EST: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACT AAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGAGGCCEST: gi|88386481|gb|CI575259.1|CI575259
genomic: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACTgtaaggattg ... acttataaagAAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGAGGCC
EST: GGCACTGAGTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACT AAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGAGGCCEST: gi|88417142|gb|CI576216.1|CI576216
genomic: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACTgtaaggattg ... acttataaagAAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGAGGCC
EST: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACT AAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGAGGCCEST: gi|88364543|gb|CI644621.1|CI644621
genomic: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACTgtaaggattg ... acttataaagAAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGAGGCC
EST: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACT AAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGAGGCCEST: gi|88433839|gb|CI584334.1|CI584334
genomic: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACTgtaaggattg ... acttataaagAAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGAGGCC
EST: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACT AAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGAGGCC
genomic: GGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACTgtaaggattg ... acttataaagAAGAAGAAAAATAAGGATTCAAGCACCAAGAAGCAGCCGGCGAGGGAGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCCAAAGGCCCCCTGGTGCATTGCCGTCATCTATGCTAGGATATGAGGCACTGACTGGTTCCTTAGATGATTTTGGGTTTGAAGATTATCTTAACTgtaaggattgctgtcctttgatttcccctgaatcttattgcttgcttttcacatttctttgcaactatttgggaaccaacttttgcttatttattatatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA