1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGCTGCAGGCGATGGTGAAGCCGCAAGTGACAAGACCAAGGTCATTTACGAGCATGTCTCCATGGAGAGAGGAGCTTTTCTGGTCCAGCAAGCGATGAGGgtcagttaccaaatcaactcccataagcttcttactctgagcttcttttacctttgaaatttgcatatatccttcatcctctggtctgtattaatttattaatgctctatatattttaacaatacctctgacttttacatatccag
species | Oryza sativa |
transcript | LOC_Os02g55200.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGGATGTCTCCATGGAGAGAGGAGCTTTTCTGGTCCAGCAAGCGATGAGG GCTTTTCGCGCACAGAACATTGAAAGTGCAAAGTCAAGGCTCAGTATGTGTEST: gi|8956748|gb|BE230551.1|BE230551
genomic: AGCATGTCTCCATGGAGAGAGGAGCTTTTCTGGTCCAGCAAGCGATGAGGgtcagttacc ... acatatccagGCTTTTCGCGCACAGAACATTGAAAGTGCAAAGTCAAGGCTCAGTATGTGT
EST: AGCATGTCTCCATGGAGAGAGGAGCTTTTCTGGTCCAGCAAGCGATGAGG GCTTTTCGCGCACAGAACATTGAAAGTGCAAAGTCAAGGCTCAGTATGTGT
genomic: AGCATGTCTCCATGGAGAGAGGAGCTTTTCTGGTCCAGCAAGCGATGAGGgtcagttacc ... acatatccagGCTTTTCGCGCACAGAACATTGAAAGTGCAAAGTCAAGGCTCAGTATGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGCAGGCGATGGTGAAGCCGCAAGTGACAAGACCAAGGTCATTTACGAGCATGTCTCCATGGAGAGAGGAGCTTTTCTGGTCCAGCAAGCGATGAGGgtcagttaccaaatcaactcccataagcttcttactctgagcttcttttacctttgaaatttgcatatatccttcatcctctggtctgtattaatttattaatgctctatatattttaacaatacctctgacttttacatatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG