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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACGGCGCTAAAGCTTGACAGTTTTGTCGGCGACGTAGAAGATGCTGTTTCATCTTCTGTGACCGGAAAACTTAAATCTCGTGCAGAAAGTTCACTGgtacgaatattgccattttagtatgggaaaaccaacatgtcaactgctaagtttggatttcgttttttctccag

Basic information

species Oryza sativa
transcript LOC_Os02g51330.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g51330.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G036418_T02 (Zea mays), 5'ss of exon 3
--AAACGGCGCTAAAGCTTGACAGTTTTGTCGGCGACGTAGAAGATGCTGTTTCATCTTCTGTGACCGGAAAACTTAAATCTCGTGCAGAAAGTTCACTGgtacgaatattgccattttagtat----gggaaaaccaacatgtcaactgctaagtttggatttcgtttt-ttctccag
  ||| ||| || || ||||||||||| || || ||  |||||||||| ||||| |||||||| || ||||||||||||||||||| ||| | |||   |||| | || ||| ||| ||   ||    || | |  |||| || || ||||||| || | |||   |||| || |||||
AGAAATGGCTCTCAAACTTGACAGTTTGGTGGGTGATATAGAAGATGCAGTTTCTTCTTCTGTTACTGGAAAACTTAAATCTCGTGTAGACAATTCGGAGgtatggatcttgtcatattgagattcttggaagagtcaacttgacagctgctaatttggcattcttttttcttttccag

upper sequence: LOC_Os02g51330.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G036418_T01 (Zea mays), 5'ss of exon 3
AAACGGCGCTAAAGCTTGACAGTTTTGTCGGCGACGTAGAAGATGCTGTTTCATCTTCTGTGACCGGAAAACTTAAATCTCGTGCAGAAAGTTCACTGgtacgaatattgccattttagtat----gggaaaaccaacatgtcaactgctaagtttggatttcgtttt-ttctccag
||| ||| || || ||||||||||| || || ||  |||||||||| ||||| |||||||| || ||||||||||||||||||| ||| | |||   |||| | || ||| ||| ||   ||    || | |  |||| || || ||||||| || | |||   |||| || |||||
AAATGGCTCTCAAACTTGACAGTTTGGTGGGTGATATAGAAGATGCAGTTTCTTCTTCTGTTACTGGAAAACTTAAATCTCGTGTAGACAATTCGGAGgtatggatcttgtcatattgagattcttggaagagtcaacttgacagctgctaatttggcattcttttttcttttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58605796|gb|CK033829.1|CK033829
EST:     TTTCATCTTCTGTGACCGGAAAACTTAAATCTCGTGCAGAAAGTTCACTG                         AAAACATATCATGTTCCTATTGGATATCTTAAAACAATAGAAGATATTTTA
genomic: TTTCATCTTCTGTGACCGGAAAACTTAAATCTCGTGCAGAAAGTTCACTGgtacgaatat ... ttttctccagAAAACATATCATGTTCCTATTGGATATCTTAAAACAATAGAAGATATTTTA