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TTATTGCACCGATTGTAAGATTTGGAAACAGAAATGATCAGTTGGTTCAGCCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAGgtataattgcttagatagtctaaatctcacaaatgatgttacatatgatcgtctttcaaagttatgtttccttgaggtgctaagagatgagaatatttgctacattgtttgctcttgtgcag
species | Oryza sativa |
transcript | LOC_Os02g50360.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAG GGTATCCAATGATCCAGAACTTTATCGTAAGATAGCTGGCGTACTAGTTGAEST: gi|88442914|gb|CI694326.1|CI694326
genomic: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAGgtataattgc ... tcttgtgcagGGTATCCAATGATCCAGAACTTTATCGTAAGATAGCTGGCGTACTAGTTGA
EST: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAG GGTATCCAATGATCCAGAACTTTATCGTAAGATAGCTGGCGTACTAGTTGEST: gi|88720294|gb|CI743593.1|CI743593
genomic: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAGgtataattgc ... tcttgtgcagGGTATCCAATGATCCAGAACTTTATCGTAAGATAGCTGGCGTACTAGTTG
EST: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAG GGTATCCAATGATCCAGAACTTTATCGTAAGATAGCTGGEST: gi|29677315|gb|CB673590.1|CB673590
genomic: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAGgtataattgc ... tcttgtgcagGGTATCCAATGATCCAGAACTTTATCGTAAGATAGCTGG
EST: ATTTCTTTCTGAG GGTCTCTAATGATCCAGAACTTTATCGTAAGATAGCTGGCGTACTAGTTGAEST: gi|88315050|gb|CI610109.1|CI610109
genomic: ATTTCTTTCTGAGgtataattgc ... tcttgtgcagGGTATCCAATGATCCAGAACTTTATCGTAAGATAGCTGGCGTACTAGTTGA
EST: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAG GGTATCCAATGATC-ACAACTTTATCGTAAGATAG-TGGCGTACTACTTGAEST: gi|88367283|gb|CI564047.1|CI564047
genomic: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAGgtataattgc ... tcttgtgcagGGTATCCAATGATCCAGAACTTTATCGTAAGATAGCTGGCGTACTAGTTGA
EST: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAG GGTATCCAATGATCCAGAACTTTATCGTAAGATAGCTGGCGTACTAGTTGAEST: gi|88312657|gb|CI587565.1|CI587565
genomic: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAGgtataattgc ... tcttgtgcagGGTATCCAATGATCCAGAACTTTATCGTAAGATAGCTGGCGTACTAGTTGA
EST: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAG GGTATCCAATGATCCAGAACTTTATCGTAAGATAGCTGGCGTACTAGTTGAEST: gi|88382727|gb|CI682617.1|CI682617
genomic: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAGgtataattgc ... tcttgtgcagGGTATCCAATGATCCAGAACTTTATCGTAAGATAGCTGGCGTACTAGTTGA
EST: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAG GGTATCCAATGATCCAGAACTTTATCGTAAGATEST: gi|88588080|gb|CI705873.1|CI705873
genomic: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAGgtataattgc ... tcttgtgcagGGTATCCAATGATCCAGAACTTTATCGTAAGAT
EST: CCGTCGGCGGTTCTTCTTCCCTTAAATCACATGACAGATTTCTTTCTGAG GGTATCCAATGATCCAGAAEST: gi|88362169|gb|CI608560.1|CI608560
genomic: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAGgtataattgc ... tcttgtgcagGGTATCCAATGATCCAGAA
EST: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAG GGTATCCAATGATCCAGAACTTTATCGTAAGATAGCEST: gi|88851911|gb|CI679469.1|CI679469
genomic: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAGgtataattgc ... tcttgtgcagGGTATCCAATGATCCAGAACTTTATCGTAAGATAGC
EST: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAG GGTATCCAATGATCCAGAACTTTATCGTAAGATAGCTGGCGTACTAGTTGAEST: gi|88352508|gb|CI654333.1|CI654333
genomic: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAGgtataattgc ... tcttgtgcagGGTATCCAATGATCCAGAACTTTATCGTAAGATAGCTGGCGTACTAGTTGA
EST: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAG GGTATCCAATGATCCAGAAEST: gi|88426827|gb|CI584190.1|CI584190
genomic: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAGgtataattgc ... tcttgtgcagGGTATCCAATGATCCAGAA
EST: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAG GGTATTCAATGATCCAGAACTTTATCGTAAGATEST: gi|88328561|gb|CI676771.1|CI676771
genomic: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAGgtataattgc ... tcttgtgcagGGTATCCAATGATCCAGAACTTTATCGTAAGAT
EST: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAG GGTATCCAATGATCCAGAACTTTATCGTAAGATAGCTGGCGTACTAGTTGAEST: gi|88582552|gb|CI699970.1|CI699970
genomic: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAGgtataattgc ... tcttgtgcagGGTATCCAATGATCCAGAACTTTATCGTAAGATAGCTGGCGTACTAGTTGA
EST: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAG GGTATCCAATGATCCAGAACTTTATCGTAAG
genomic: CCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAGgtataattgc ... tcttgtgcagGGTATCCAATGATCCAGAACTTTATCGTAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATTGCACCGATTGTAAGATTTGGAAACAGAAATGATCAGTTGGTTCAGCCGTCGGCGGTTCTTCTTCCCTTAAATCAGATGACAGATTTCTTTCTGAGgtataattgcttagatagtctaaatctcacaaatgatgttacatatgatcgtctttcaaagttatgtttccttgaggtgctaagagatgagaatatttgctacattgtttgctcttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG