1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AATATGCTGATCGAAGCTCCTCCATGGGTGTCCTTGCTAGGGATGATATGCATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGGgtatgttcaaaccttttaagagaggatatgtagccgacagactatatgttatgacaaatggtgtcaaatcatataaatatctgacattctgactgcttgatgtcctacaaatgtag
species | Oryza sativa |
transcript | LOC_Os02g49800.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGG GTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCEST: gi|29666293|gb|CB662568.1|CB662568
genomic: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGGgtatgttcaa ... acaaatgtagGTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTC
EST: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGG GTGTGCATATGATCAGEST: gi|427111|gb|D23192.1|D23192
genomic: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGGgtatgttcaa ... acaaatgtagGTGTGCATATGATCAG
EST: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGG GTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGAEST: gi|86843806|gb|CI336615.1|CI336615
genomic: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGGgtatgttcaa ... acaaatgtagGTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGA
EST: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGG GTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGAEST: gi|27576738|gb|CA999432.1|CA999432
genomic: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGGgtatgttcaa ... acaaatgtagGTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGA
EST: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGG GTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGAEST: gi|2310453|gb|C26608.1|C26608
genomic: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGGgtatgttcaa ... acaaatgtagGTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGA
EST: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGG GTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGAEST: gi|88276836|gb|CI395999.1|CI395999
genomic: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGGgtatgttcaa ... acaaatgtagGTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGA
EST: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGG GTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGAEST: gi|86835611|gb|CI348068.1|CI348068
genomic: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGGgtatgttcaa ... acaaatgtagGTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGA
EST: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGG GTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGAEST: gi|29642625|gb|CB647632.1|CB647632
genomic: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGGgtatgttcaa ... acaaatgtagGTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGA
EST: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGG GTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGAEST: gi|29669337|gb|CB665612.1|CB665612
genomic: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGGgtatgttcaa ... acaaatgtagGTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGA
EST: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGG GTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGAEST: gi|88969944|gb|CI383446.1|CI383446
genomic: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGGgtatgttcaa ... acaaatgtagGTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGA
EST: CATATTATCACTACTAATGTTGGAAGGGAAAAACTAGATTTTGTGTTTGG GTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGAEST: gi|157650384|gb|EX450018.1|EX450018
genomic: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGGgtatgttcaa ... acaaatgtagGTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGA
EST: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGG GTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGAEST: gi|29664921|gb|CB661196.1|CB661196
genomic: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGGgtatgttcaa ... acaaatgtagGTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGA
EST: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGG GTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGAEST: gi|427119|gb|D23201.1|D23201
genomic: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGGgtatgttcaa ... acaaatgtagGTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGA
EST: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGG GTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGA
genomic: CATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGGgtatgttcaa ... acaaatgtagGTGTGCATATGATCAGCAAGGCCAGCTTTTGGCCTCACCAGCTAAGACCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATATGCTGATCGAAGCTCCTCCATGGGTGTCCTTGCTAGGGATGATATGCATATTATCACTACTAATGGTGGAAGGGAAAAACTAGATTTTGTGTTTGGgtatgttcaaaccttttaagagaggatatgtagccgacagactatatgttatgacaaatggtgtcaaatcatataaatatctgacattctgactgcttgatgtcctacaaatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG