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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGCGTTCCAGTTCCAAGGGGTGTTTATGTAGGGGGTTATGGTCAGCACCGGACACTTCCTCTTGGGTATTACCAAGGATTCCCGGTTCCGCAATACAGgtatgatgtgttaacttttccaatgcagcttcctgctcttagatggcccatttgtgacaatcttcaagtagttcttacttaggcgtccacatttggcata...

Basic information

species Oryza sativa
transcript LOC_Os02g48340.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29658157|gb|CB654432.1|CB654432
EST:     CGGACACTTCCTCTTGGGTATTACCAAGGATTCCCGGTTCCGCAATACAC                         CTACACTACATATGGGACAGAATACATCTATCCACAG
genomic: CGGACACTTCCTCTTGGGTATTACCAAGGATTCCCGGTTCCGCAATACAGgtatgatgtg ... ccttttgcagCTACACTACATATGGGACAGAATACATCTATCCACAG
EST: gi|38474304|gb|CF958436.1|CF958436
EST:     CGGACACTTCCTCTTGGGTATTACCAAGGATTCCCGGTTCCTCAATACAG                         CTACACTACATATGGGACAGAATACATCTATCCACAG
genomic: CGGACACTTCCTCTTGGGTATTACCAAGGATTCCCGGTTCCGCAATACAGgtatgatgtg ... ccttttgcagCTACACTACATATGGGACAGAATACATCTATCCACAG
EST: gi|33793822|gb|CF322799.1|CF322799
EST:     TTCCCGGTTCCGCAATACAG                         CTACACTACATATGGGACAGAATACATCTATCCACAG
genomic: TTCCCGGTTCCGCAATACAGgtatgatgtg ... ccttttgcagCTACACTACATATGGGACAGAATACATCTATCCACAG
EST: gi|29677295|gb|CB673570.1|CB673570
EST:     CGGACACTTCCTCTTGGGTATTACCAAGGATTCCCGGTTCCGCAATACAG                         CTACACTACACTATGGGACAGAATACATCTATCCACAG
genomic: CGGACACTTCCTCTTGGGTATTACCAAGGATTCCCGGTTCCGCAATACAGgtatgatgtg ... ccttttgcagCTACACTACA-TATGGGACAGAATACATCTATCCACAG