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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAACCAGCTGCCTCTCTTGTTGGGCACCAGCTTGCTGTCGTTTCATTAGTAGTAGGAGCCATGAGGCTTTACTCTGCTTCAATGGACAAAACAATTAGAgtaaggagaacttttgactcttggttcacacctattcatgtttactcttaaacagatacacttgctgttggaagctctgttgcatatataaacttcccca...

Basic information

species Oryza sativa
transcript LOC_Os02g45480.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g45480.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G037200_T01 (Zea mays), 5'ss of exon 5
TGAACCAGCTGCCTCTCTTGTTGGGCACCAGCTTGCTGTCGTTTCATTAGTAGTAGGAGCCATGAGGCTTTACTCTGCTTCAATGGACAAAACAATTAGAgtaaggagaacttttgactcttggttcacacctattcatgtttactcttaa-acagatacacttgctgttggaagctctgttgcatatataaacttcccca----------
||| |||||||| ||||| | ||| ||  |||||||||| ||||||||  ||||||||| |||||||||||| |||||||||||||| ||||| || |||||| | | | |||          |||||| |  | ||||| | | |||||| | |||| || |   ||  | |   | || ||  |  || |  ||               
TGAGCCAGCTGCTTCTCTAGATGGCCATAAGCTTGCTGTTGTTTCATTGATAGTAGGAGGCATGAGGCTTTATTCTGCTTCAATGGATAAAACTATCAGAgtatgcaaagctt----------gttcacccacactcatgctcagtcttaagatagattcaatatatgaagaagtatatgctgtgt-catgagattttaagttcttgttga

upper sequence: LOC_Os02g45480.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA16G32370.1 (Glycine max), 5'ss of exon 5
TGAACCAGCTGCCTCTCTTGTTGGGCACCAGCTTGCTGTCGTTTCATTAGTAGTAGGAGCCATGAGGCTTTACTCTGCTTCAATGGACAAAACAATTAGAgtaag-----gagaacttttgactcttggttcac-acctattcatgtttactcttaaacagatacacttgctgttggaa----gctctgttgcatatataaacttcccca--------------------
||| || ||||| || |||   || ||    |  | ||| ||||||||||| || || ||||  || |||||||||| |||||||||||| ||||| ||||||||        | || ||  |  |   | |   |   |||    ||||  ||  ||   ||  | |    | |          | ||||   |   || | |||  |                     
TGAGCCGGCTGCATCACTTAAAGGTCATTCTCGGGGTGTTGTTTCATTAGTTGTTGGTGCCAATAGACTTTACTCTGGTTCAATGGACAATACAATAAGAgtaagtttacataagctctttgccataaatgcctgattcattttcctttagactctaagtaatgtattaataggttttgttttattttgttaatttggtacatttcttccaactggtttatgtcttttag