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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCATTTACAACCTTTAACATGTACTGGGAGAAGTGCATGGAATTACCTATTGACGCATCACCGTCACTTGCACCTTGGAAATTGGTGCCTGTCCCAGgtagatcgtggctagtggcctaccattatttatcttttttatttttgaagattttctatgtttttaatttgtctgtacttacagaattatctctagatta...

Basic information

species Oryza sativa
transcript LOC_Os02g41550.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g41550.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G172152_T01 (Zea mays), 5'ss of exon 3
CTTGCATTTACAACCTTTAACATGTACTGGGAGAAGTGCATGGAATTACCTATTGACGCATCACCGTCACTTGCACCTTGGAAATTGGTGCCTGTCCCAGgtagatcgtggctagtggcctaccattatttatcttttttatttttgaagattttctatgtttttaatttgtctgtact-tacagaattatctctagatta---------
|  ||||||||||||||||||| |||||||||||| || |||    ||||||||||   |||||  |  |||||||||   |   ||||| | |  |||||||  |  | || |      || ||| ||||    |||| ||    ||  || |     |||||| |||| |||| | |  | ||| || | | ||| ||          
CAGGCATTTACAACCTTTAACAAGTACTGGGAGAAATGTATGAGCCTACCTATTGAGATATCACAATATCTTGCACCTACAAGGCTGGTGGCAGCGCCAGgtaactttttgcca------tagcatcattttctgttttcat----gagcatctgtacagttttttatttatctgcattacatagatttgtttttagttttggttcctca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29674937|gb|CB671212.1|CB671212
EST:     TATTGACGCATCACCGTCACTTGCACCTTGGAAATTGGTGCCTGTCCCAG                         GTTTGGAGAGTGTTCGTAGCTGTTCTGTTGATGACCTAGGACTTGAATCAA
genomic: TATTGACGCATCACCGTCACTTGCACCTTGGAAATTGGTGCCTGTCCCAGgtagatcgtg ... tgacattcagGTTTGGAGAGTGTTCGTAGCTGTTCTGTTGATGACCTAGGACTTGAATCAA
EST: gi|29629647|gb|CB634656.1|CB634656
EST:     TATTGACGTATCACCGTCACTTGCACCTTGGAAATTGGTGCCTGTCCCAG                         GTTTGGAGAGTGTTCGTAGCTGTTCTGTTGATGACCTANGACTTGAAT
genomic: TATTGACGCATCACCGTCACTTGCACCTTGGAAATTGGTGCCTGTCCCAGgtagatcgtg ... tgacattcagGTTTGGAGAGTGTTCGTAGCTGTTCTGTTGATGACCTAGGACTTGAAT
EST: gi|29671259|gb|CB667534.1|CB667534
EST:     TATTGACGCATCACCGTCACTTGCACCTTGGAAATTGGTGCCTGTCCCAG                         GTTTGGAGAGTGTTCGTAGCTGTTCTGTTGATGACCTAGGACTTGAATCAA
genomic: TATTGACGCATCACCGTCACTTGCACCTTGGAAATTGGTGCCTGTCCCAGgtagatcgtg ... tgacattcagGTTTGGAGAGTGTTCGTAGCTGTTCTGTTGATGACCTAGGACTTGAATCAA
EST: gi|29627388|gb|CB632399.1|CB632399
EST:     TATTGACGTATCACCGTCACTTGCACCTTGGAAATTGGTGCCTGTCCCAG                         GTTTGGAGAGTGTTCGTAGCTGTTCTGTTGATGACCTAGGACTTGAATCAA
genomic: TATTGACGCATCACCGTCACTTGCACCTTGGAAATTGGTGCCTGTCCCAGgtagatcgtg ... tgacattcagGTTTGGAGAGTGTTCGTAGCTGTTCTGTTGATGACCTAGGACTTGAATCAA
EST: gi|29641884|gb|CB646891.1|CB646891
EST:     TATTGACGCATCACCGTCACTTGCACCTTGGAAATTGGTGCCTGTCCCAG                         GTTTGGAGAGTGTTCGTAGCTGTTCTGTTGATGACCTAGGACTTGAATCAA
genomic: TATTGACGCATCACCGTCACTTGCACCTTGGAAATTGGTGCCTGTCCCAGgtagatcgtg ... tgacattcagGTTTGGAGAGTGTTCGTAGCTGTTCTGTTGATGACCTAGGACTTGAATCAA
EST: gi|29668745|gb|CB665020.1|CB665020
EST:     TATTGACGCATCACCGTCACTTGCACCTTGGAAATTGGTGCCTGTCCCAG                         GTTTGGAGAGTGTTCGTAGCTGTTCTGTTGATGACCTAGGACTTGAATCAA
genomic: TATTGACGCATCACCGTCACTTGCACCTTGGAAATTGGTGCCTGTCCCAGgtagatcgtg ... tgacattcagGTTTGGAGAGTGTTCGTAGCTGTTCTGTTGATGACCTAGGACTTGAATCAA