1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATAAATTTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcctttttctgcatgacactgttaataatacattgtgtttcattcctcattttcattagtaaatttctagtgttatctatgtgatagatgcat...
species | Oryza sativa |
transcript | LOC_Os02g40890.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|396941616|gb|HO188273.1|HO188273
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACTTTGGGGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|56158000|gb|C28825.2|C28825
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|396941507|gb|HO188716.1|HO188716
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|33807484|gb|CF329619.1|CF329619
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|66914261|gb|CX101109.1|CX101109
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAAATTTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcctttttctgcatgacactgttaataatacattgtgtttcattcctcattttcattagtaaatttctagtgttatctatgtgatagatgcat
- - - TTGGAG
- - - - GGAGCT
- - - - - AGCTGC
- - - - - GCTGCT
- - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - TGGTGG