1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATAAATTTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcctttttctgcatgacactgttaataatacattgtgtttcattcctcattttcattagtaaatttctagtgttatctatgtgatagatgcat...
species | Oryza sativa |
transcript | LOC_Os02g40890.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|88313720|gb|CI597351.1|CI597351
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|88315500|gb|CI615372.1|CI615372
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGGACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTATTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|33662438|gb|CF293405.1|CF293405
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|88312983|gb|CI592267.1|CI592267
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|66914261|gb|CX101109.1|CX101109
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|88423687|gb|CI617039.1|CI617039
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|33807484|gb|CF329619.1|CF329619
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|2429002|gb|C73465.1|C73465
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|88347065|gb|CI631145.1|CI631145
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|396941507|gb|HO188716.1|HO188716
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|58680738|gb|CK069425.1|CK069425
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|33657911|gb|CF280525.1|CF280525
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|88345773|gb|CI631041.1|CI631041
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TGGAGCTGCCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAACTATTCTTCAGACCCCATCAAAATATGAGCAATTGTEST: gi|88350631|gb|CI631354.1|CI631354
genomic: TGGAGCTGC-TATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAA-TATTCTTCAGACCC-ATCAAAATATGAGCAATTGT
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|88353482|gb|CI631667.1|CI631667
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|396941616|gb|HO188273.1|HO188273
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACTTTGGGGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|88719529|gb|CI743039.1|CI743039
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAGATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|88343436|gb|CI621804.1|CI621804
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGGTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|88692204|gb|CI735779.1|CI735779
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATCCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|86596781|gb|CI286694.1|CI286694
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|88396738|gb|CI620071.1|CI620071
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|88347123|gb|CI631203.1|CI631203
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTACEST: gi|88720933|gb|CI744232.1|CI744232
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
EST: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACG AGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
genomic: TTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcc ... cattcttcagAGGCTGGAAAATAAATATTCTTCAGACCCATCAAAATATGAGCAATTGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAAATTTGGAGCTGCTATGGCACTTGTGAAGAGTGACATTGGTGGTAATATCACGgtaagcatcctttttctgcatgacactgttaataatacattgtgtttcattcctcattttcattagtaaatttctagtgttatctatgtgatagatgcat
- - - TTGGAG
- - - - GGAGCT
- - - - - AGCTGC
- - - - - GCTGCT
- - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - TGGTGG