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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCATGGAGAAGACAAGGACATAATGGGTGAGGTAACCAAGACCCACGAAGCCATACAgtgagctcacttgaccctagttggagttcactttatggttacgagttgcttgaatatttgtttctgaaaggattctctcctttggatttgttttgtggcgttag

Basic information

species Oryza sativa
transcript LOC_Os02g35870.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g35870.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G070708_T02 (Zea mays), 5'ss of exon 3
AAGCATGGAGAAGACAAGGACATAATGGGTGAGGTAACCAAGACCCACGAAGCCATACAgtgagctcacttgaccctagttggagttcactttatggttacgagttgcttgaatatttgtttctgaaaggattctctcctttggatttgttttgtggcgttag
|||||||| ||||||||||| |||||||| |||||||||||||| || |||||||||||||||||||  |  ||   |  ||| |||||  |||    | | | |   |||| | || || ||||||      || | ||||||| ||  ||| ||| |||||
AAGCATGGGGAAGACAAGGATATAATGGGAGAGGTAACCAAGACTCATGAAGCCATACAgtgagctccttcaacttcatatggggttcaacttaaccatgcaactgtgttgagttttagtatctgaaga----cttttctttggaatttgtttatggtgttag

upper sequence: LOC_Os02g35870.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G013079_T01 (Zea mays), 5'ss of exon 3
AAGCATGGAGAAGACAAGGACATAATGGGTGAGGTAACCAAGACCCACGAAGCCATACAgtgagctcacttgaccctagttggagttcactttatggttacgagt-tgcttgaatatttgtttctgaaaggattctctcctttggatttgttttgtggcgttag
|||||||| ||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||  |  ||      ||| |||||  ||     | | | | || |||| | ||||| ||||||     | | ||||| | ||||||||  ||| | |||
AAGCATGGGGAAGACAAGGATATAATGGGAGAGGTAACCAAGACCCATGAAGCTATACAgtgagctccttcaacttcgaatggggttcaacttgaccatgcaactgtgtttgagtttttgtatctgaaga---tttttccttggaatttgttt-atggtgctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58601085|gb|CK011613.1|CK011613
EST:     GAAGACAAGGACATAATGGGTGAGGTAACCAAGACCCACGAAGCCATACA                         ATTGTTGGATAAGTCCATCTCCACGCTGCAGATGGAACTTGCAGCTAAGCG
genomic: GAAGACAAGGACATAATGGGTGAGGTAACCAAGACCCACGAAGCCATACAgtgagctcac ... gtggcgttagATTGTTGGATAAGTCCATCTCCACGCTGCAGATGGAACTTGCAGCTAAGCG
EST: gi|58678637|gb|CK067324.1|CK067324
EST:     GAAGACAAGGACATAATGGGTGAGGTAACCAAGACCCACGAAGCCATACA                         ATTGTTGGATAAGTCCATCTCCACGCTGCAGATGGAACTTGCAGCTAAGCG
genomic: GAAGACAAGGACATAATGGGTGAGGTAACCAAGACCCACGAAGCCATACAgtgagctcac ... gtggcgttagATTGTTGGATAAGTCCATCTCCACGCTGCAGATGGAACTTGCAGCTAAGCG
EST: gi|29682555|gb|CB678830.1|CB678830
EST:     CCAAGACCCACGAACCCATACA                         ATTGTTGGATAAGTCCATCTCCACGCTGCAGATGGAACTTGCAGCTAAGCG
genomic: CCAAGACCCACGAAGCCATACAgtgagctcac ... gtggcgttagATTGTTGGATAAGTCCATCTCCACGCTGCAGATGGAACTTGCAGCTAAGCG