1 5' 3' | 2 5' 3' | 3 5' 3' |
ATGTGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCAGATTCACCACAATCTGCAGCCAGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGgttggtttcttcatcttgttccataaattttgaagagccaccaaattttctaaccctgttctgtgataatgcag
species | Oryza sativa |
transcript | LOC_Os02g35700.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCTGCAGCCAGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTG ATACTGTGGAACATGATGAGCTGTAGTCCTGTAGAGGATAGACAGGTGTATEST: gi|88546587|gb|CI476239.1|CI476239
genomic: TCTGCAGCCAGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGgttggtttct ... gataatgcagATACTGTGGAACATGATGAGCTGTAGTCCTGTAGAGGATAGACAGGTGTAT
EST: CCAGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTG ATACTGTGGAACATGATGAGCTGTAGTCCTGTAGAGGATAGACAGGTGTATEST: gi|86415016|gb|CI069419.1|CI069419
genomic: CCAGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGgttggtttct ... gataatgcagATACTGTGGAACATGATGAGCTGTAGTCCTGTAGAGGATAGACAGGTGTAT
EST: ACAATCTGCAGCCAGAGAAATTTCATTTTTCTTNGGAGATGTTAGATCTG ATACTGTGGAACATGATGAGCTGTAGTCCTGTAGAGGATAGACAGGTGTATEST: gi|88545410|gb|CI474971.1|CI474971
genomic: ACAATCTGCAGCCAGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGgttggtttct ... gataatgcagATACTGTGGAACATGATGAGCTGTAGTCCTGTAGAGGATAGACAGGTGTAT
EST: CATTTTTCTTTGGAGATGTTAGATCTG ATACTGTGGAACATGATGAGCTGTAGTCCTGTAGAGGATAGACAGGTGTATEST: gi|15852143|gb|BI804939.1|BI804939
genomic: CATTTTTCTTTGGAGATGTTAGATCTGgttggtttct ... gataatgcagATACTGTGGAACATGATGAGCTGTAGTCCTGTAGAGGATAGACAGGTGTAT
EST: ACAATCTGCAGCCAGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTG ATACTGTGGAACATGATGAGCTGTAGTCCTGTAGAGGATAGACAGGTGTATEST: gi|88551382|gb|CI481435.1|CI481435
genomic: ACAATCTGCAGCCAGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGgttggtttct ... gataatgcagATACTGTGGAACATGATGAGCTGTAGTCCTGTAGAGGATAGACAGGTGTAT
EST: AGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTG ATACTGTGGAACATGATGAGCTGTAGTCCTGTAGAGGATAGACAGGTGTAT
genomic: AGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGgttggtttct ... gataatgcagATACTGTGGAACATGATGAGCTGTAGTCCTGTAGAGGATAGACAGGTGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCAGATTCACCACAATCTGCAGCCAGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGgttggtttcttcatcttgttccataaattttgaagagccaccaaattttctaaccctgttctgtgataatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG