1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGGGAAGAGGCCCAAAAGAGGATTGAAGCGCTTAATGAGCCATATAAGTTGGAAATTTTGGAGGGCATCAAGGAAGATCCTATCACAATCTATCACATTGgtttgtagtgccatctcgtttgattttgagcattacattttcgtcatgcattttttttttggttgatcggtggagtctatgctcatgttggtgaattcactgtatactgtag
species | Oryza sativa |
transcript | LOC_Os02g33500.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGAAATTTTGGAGGGCATCAAGGAAGAACCTATCACAATCTATCACATTG GAGAAGAGTGGTGGGATCTCTGTGCCGGACCTCATGEST: gi|58604883|gb|CK032916.1|CK032916
genomic: GGAAATTTTGGAGGGCATCAAGGAAGATCCTATCACAATCTATCACATTGgtttgtagtg ... tatactgtagGAGAAGAGTGGTGGGATCTCTGTGCCGGACCTCATG
EST: GGAAATTTTGGAGGGCATCAAGGAAGAACCTATCACAATCTATCACATTG GAGAAGAGTGGTGGGATCTCTGTGCCGGACCTCATGTCGAGTCTACTGGCAEST: gi|29643996|gb|CB649003.1|CB649003
genomic: GGAAATTTTGGAGGGCATCAAGGAAGATCCTATCACAATCTATCACATTGgtttgtagtg ... tatactgtagGAGAAGAGTGGTGGGATCTCTGTGCCGGACCTCATGTCGAGTCTACTGGCA
EST: GGAAATTTTGGAGGGCATCAAGGAAGATCCTATCACAATCTATCACATTG GAGAAGAGTGGTGGGATCTCTGTGCCGGACCTCATGTCGAGTCTACTGGCAEST: gi|29613162|gb|CB618175.1|CB618175
genomic: GGAAATTTTGGAGGGCATCAAGGAAGATCCTATCACAATCTATCACATTGgtttgtagtg ... tatactgtagGAGAAGAGTGGTGGGATCTCTGTGCCGGACCTCATGTCGAGTCTACTGGCA
EST: GGAAATTTTGGAGGGCATCAAGGAAGAACCTATCACAATCTATCACATTG GAGAAGAGTGGTGGGATCTCTGTGCCGGACCTCATGTCGAGTCTACTGGCA
genomic: GGAAATTTTGGAGGGCATCAAGGAAGATCCTATCACAATCTATCACATTGgtttgtagtg ... tatactgtagGAGAAGAGTGGTGGGATCTCTGTGCCGGACCTCATGTCGAGTCTACTGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGAAGAGGCCCAAAAGAGGATTGAAGCGCTTAATGAGCCATATAAGTTGGAAATTTTGGAGGGCATCAAGGAAGATCCTATCACAATCTATCACATTGgtttgtagtgccatctcgtttgattttgagcattacattttcgtcatgcattttttttttggttgatcggtggagtctatgctcatgttggtgaattcactgtatactgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA