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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGCCTGTCAGTAAAAGGAAAGCAACAGAGTTAAAGTCACTGGGTAATAAGGCGGTCGAGAAAAAGGATTATCTTTCTGCAACAGGATTCTACAGTCAGgtacttcagaacaccaagtttcctcattttgttcatctctattttgaacttgtactttcatacattgtacagagattatgacctggctttgcttattctc...

Basic information

species Oryza sativa
transcript LOC_Os02g29150.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29663342|gb|CB659617.1|CB659617
EST:     AGGCGGTCGAGAAAAAGGATTATCTTTCTGCAACAGGATTCTACAGTCAG                         GCAGTGGACCTTTACCCTGATGATGCAACCTTGTTCTCAAATAGAAGCCTT
genomic: AGGCGGTCGAGAAAAAGGATTATCTTTCTGCAACAGGATTCTACAGTCAGgtacttcaga ... ttcaatgtagGCAGTGGACCTTTACCCTGATGATGCAACCTTGTTCTCAAATAGAAGCCTT
EST: gi|8857531|gb|AU094849.1|AU094849
EST:     GGCGGTCGAGAAAAAGGATTATCTTTCTGNCAACAGGATTCTACAGTCAG                         GCAGTGGACCTTTACCCTGATGATNCAACCTTGTTNTCAAATAGAAGCCTT
genomic: GGCGGTCGAGAAAAAGGATTATCTTTCTG-CAACAGGATTCTACAGTCAGgtacttcaga ... ttcaatgtagGCAGTGGACCTTTACCCTGATGATGCAACCTTGTTCTCAAATAGAAGCCTT