1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCAAGTTGATGCTGCCCCCTTCAAGCAGTGGTACCTCACTCACTATGGAGTGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttctcccttctgttgtacattttgatgtgattggtatagtagattcttatacacaattatttgtcgtcttataacttaagcttggtatcacttt...
species | Oryza sativa |
transcript | LOC_Os02g28810.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTEST: gi|58602538|gb|CK013066.1|CK013066
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... acaggggcagG---A---TGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGT
EST: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTTEST: gi|218491441|gb|FG947040.1|FG947040
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... acaggggcagG---A---TGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTTEST: gi|33811510|gb|CF331643.1|CF331643
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... acaggggcagG---A---TGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTTEST: gi|86592532|gb|CI253213.1|CI253213
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... acaggggcagG---A---TGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGGGGCAGEST: gi|58689688|gb|CK078375.1|CK078375
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCT-----G-AGgtatttttct ... acagg
EST: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTTEST: gi|218482141|gb|FG968611.1|FG968611
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... acaggggcagG---A---TGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTTEST: gi|218498995|gb|FG968232.1|FG968232
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... acaggggcagG---A---TGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTTEST: gi|58693330|gb|CK082017.1|CK082017
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... acaggggcagG---A---TGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTTEST: gi|33655298|gb|CF277912.1|CF277912
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... acaggggcagG---A---TGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTTEST: gi|88962721|gb|CI023821.1|CI023821
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... acaggggcagG---A---TGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGGGGCAG
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCT-----G-AGgtatttttct ... acagg
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAGTTGATGCTGCCCCCTTCAAGCAGTGGTACCTCACTCACTATGGAGTGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttctcccttctgttgtacattttgatgtgattggtatagtagattcttatacacaattatttgtcgtcttataacttaagcttggtatcacttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG