Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACGGACGCCTCAACAAGTGTGGTGTCATCAGCCCTCGCTTCGATGTTGGTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaagaagctataatttatttgggaacatccattagcttcagttcttttttctgtgaaatgttactaatgtttattgtttgttgctctccag

Basic information

species Oryza sativa
transcript LOC_Os02g27760.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86423613|gb|CI062374.1|CI062374
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88963015|gb|CI025501.1|CI025501
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86418693|gb|CI053494.1|CI053494
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86424400|gb|CI063161.1|CI063161
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86254298|gb|CI059025.1|CI059025
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|89165081|gb|CI255138.1|CI255138
EST:     TGTCCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: TGT-CAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86254584|gb|CI059311.1|CI059311
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88212501|gb|CI212141.1|CI212141
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88957575|gb|CI011504.1|CI011504
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88490522|gb|CI427794.1|CI427794
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|89167787|gb|CI021486.1|CI021486
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88212175|gb|CI211815.1|CI211815
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88975110|gb|CI023361.1|CI023361
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCGTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88211445|gb|CI211085.1|CI211085
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86254498|gb|CI059225.1|CI059225
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86420890|gb|CI056879.1|CI056879
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86423846|gb|CI062607.1|CI062607
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86422809|gb|CI060382.1|CI060382
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86530981|gb|CI171187.1|CI171187
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCCGGCATTATGGACCATGAGGGG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88975441|gb|CI023692.1|CI023692
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86905257|gb|CI283221.1|CI283221
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86424035|gb|CI062796.1|CI062796
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|89197047|gb|CI021887.1|CI021887
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCAGGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86254480|gb|CI059207.1|CI059207
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86420742|gb|CI056731.1|CI056731
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88208713|gb|CI208562.1|CI208562
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|29683279|gb|CB679554.1|CB679554
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86422789|gb|CI060362.1|CI060362
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88979174|gb|CI025676.1|CI025676
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86532013|gb|CI172219.1|CI172219
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86257744|gb|CI064097.1|CI064097
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88207899|gb|CI207748.1|CI207748
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88241214|gb|CI241063.1|CI241063
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86422761|gb|CI060334.1|CI060334
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88212968|gb|CI212817.1|CI212817
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|87013795|gb|CI269294.1|CI269294
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|44678721|gb|CR292155.1|CR292155
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAA
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86256954|gb|CI061717.1|CI061717
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86532153|gb|CI172359.1|CI172359
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|89193408|gb|CI050706.1|CI050706
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86423022|gb|CI060595.1|CI060595
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88242007|gb|CI241856.1|CI241856
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86534293|gb|CI174499.1|CI174499
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86254527|gb|CI059254.1|CI059254
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88237031|gb|CI236880.1|CI236880
EST:     GTGTCAAGGAAATCGAGTCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88981430|gb|CI027048.1|CI027048
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86531454|gb|CI171660.1|CI171660
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88244316|gb|CI243438.1|CI243438
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86258323|gb|CI064676.1|CI064676
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88279869|gb|CI401067.1|CI401067
EST:     CTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: CTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88517166|gb|CI444502.1|CI444502
EST:     ATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: ATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86602099|gb|CI260569.1|CI260569
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88242072|gb|CI241921.1|CI241921
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86534495|gb|CI174701.1|CI174701
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88243830|gb|CI242952.1|CI242952
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86251654|gb|CI016943.1|CI016943
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCGGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86422735|gb|CI060308.1|CI060308
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88207617|gb|CI207466.1|CI207466
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88539949|gb|CI469948.1|CI469948
EST:     GTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|87005274|gb|CI283497.1|CI283497
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88459962|gb|CI524421.1|CI524421
EST:     GTTTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86257870|gb|CI064223.1|CI064223
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86423542|gb|CI062303.1|CI062303
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86533040|gb|CI173246.1|CI173246
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86601999|gb|CI260469.1|CI260469
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86530455|gb|CI170661.1|CI170661
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86846955|gb|CI283084.1|CI283084
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86499325|gb|CI141958.1|CI141958
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86254445|gb|CI059172.1|CI059172
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|89199067|gb|CI255333.1|CI255333
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88209414|gb|CI209263.1|CI209263
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86422904|gb|CI060477.1|CI060477
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|87020304|gb|CI261168.1|CI261168
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86854324|gb|CI254269.1|CI254269
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86254332|gb|CI059059.1|CI059059
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86533302|gb|CI173508.1|CI173508
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86260842|gb|CI066517.1|CI066517
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86530410|gb|CI170616.1|CI170616
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCCGGCATTATGGACCATGAGGGG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88214823|gb|CI212861.1|CI212861
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|87018768|gb|CI254476.1|CI254476
EST:     GTGTCAAGGAGATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|88216302|gb|CI216151.1|CI216151
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|87028649|gb|CI266048.1|CI266048
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
EST: gi|86422356|gb|CI059929.1|CI059929
EST:     GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAG                         TTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG
genomic: GTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 154

GAACGGACGCCTCAACAAGTGTGGTGTCATCAGCCCTCGCTTCGATGTTGGTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaag ... tgctctccagTTTGGGTACATTGTCCTTACTACTTCAGCTGGCATTATGGACCATGAGGAGGCTCGCAGAAAGAACGTTGGTGGGAAGGTCCTCGGTTTCTTCTACTAGA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACGGACGCCTCAACAAGTGTGGTGTCATCAGCCCTCGCTTCGATGTTGGTGTCAAGGAAATCGAATCATGGACTGCGAGGCTGCTTCCCTCCAGACAGgttagtaaagaagctataatttatttgggaacatccattagcttcagttcttttttctgtgaaatgttactaatgtttattgtttgttgctctccag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT