1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATGAAAGAAACTGTATCTGCTGATGCTAAAAAAGAAAAGgtatgcttctatatactgcagagctagctaagtcatgtttgttgtttacctttcacgcgcatttcctttaaatatgcaaatgaaaaaactgtcagagagtgatgacatgtatttacaaacaatttgcatttaatttcag
species | Oryza sativa |
transcript | LOC_Os02g27594.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATGAAAGAAACTGTATCTGCTGATGCTAAAAAAGAAAAG AAGCAAACTAAGTATAAGGATGCTCCACCCACTGCATTTGATCTTTTCAAGEST: gi|27577231|gb|CA999925.1|CA999925
genomic: ATGAAAGAAACTGTATCTGCTGATGCTAAAAAAGAAAAGgtatgcttct ... ttaatttcagAAGCAAACTAAGTATAAGGATGCTCCACCCACTGCATTTGATCTTTTCAAG
EST: ATGAAAGAAACTGTATCTGCTGATGCTAAAAAAGAAAAG AAGCAAACTAAGTATAAGGATGCTCCACCCACTGCATTTGATCTTTTCAAGEST: gi|38480502|gb|CF964591.1|CF964591
genomic: ATGAAAGAAACTGTATCTGCTGATGCTAAAAAAGAAAAGgtatgcttct ... ttaatttcagAAGCAAACTAAGTATAAGGATGCTCCACCCACTGCATTTGATCTTTTCAAG
EST: ATGAAAGAAACTGTATCTGCGTGGTGCTAAAAAAGAAAAG AAGCAAACTAAGTATAAGGATGCTCCACCCACTGCATTTGATCTTTTCAAGEST: gi|88257092|gb|CI359480.1|CI359480
genomic: ATGAAAGAAACTGTATCTGC-TGATGCTAAAAAAGAAAAGgtatgcttct ... ttaatttcagAAGCAAACTAAGTATAAGGATGCTCCACCCACTGCATTTGATCTTTTCAAG
EST: TGAAAGAAACTGTATCTGCTGATGCTAAAAAAGAAAAG AAGCAAAGTAAGTATAAGGATGCTCCACCCACTGCATTTGATCTTTTCAAGEST: gi|58693295|gb|CK081982.1|CK081982
genomic: TGAAAGAAACTGTATCTGCTGATGCTAAAAAAGAAAAGgtatgcttct ... ttaatttcagAAGCAAACTAAGTATAAGGATGCTCCACCCACTGCATTTGATCTTTTCAAG
EST: ATGAAAGAAACTGTATCTGCTGATGCTAAAAAAGAAAAG AAGCAAACTAAGTATAAGGATGCTCCACCCACTGCATTTGATCTTTTCAAGEST: gi|88374682|gb|CI518549.1|CI518549
genomic: ATGAAAGAAACTGTATCTGCTGATGCTAAAAAAGAAAAGgtatgcttct ... ttaatttcagAAGCAAACTAAGTATAAGGATGCTCCACCCACTGCATTTGATCTTTTCAAG
EST: ATGAAAGAAACTGTATCTGCTGATGCTAAAAAAGAAAAG AAGCAAACTAAGTATAAGGATGCTCCACCCACTGCATTTGATCTTTTCAAGEST: gi|86496213|gb|CI138846.1|CI138846
genomic: ATGAAAGAAACTGTATCTGCTGATGCTAAAAAAGAAAAGgtatgcttct ... ttaatttcagAAGCAAACTAAGTATAAGGATGCTCCACCCACTGCATTTGATCTTTTCAAG
EST: ATGAAAGAAACTGTATCTGCTGATGCTAAAAAAGAAAAG AAGCAAACTAAGTATAAGGATGCTCCACCCACTGCATTTGATCTTTTCAAG
genomic: ATGAAAGAAACTGTATCTGCTGATGCTAAAAAAGAAAAGgtatgcttct ... ttaatttcagAAGCAAACTAAGTATAAGGATGCTCCACCCACTGCATTTGATCTTTTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGAAAGAAACTGTATCTGCTGATGCTAAAAAAGAAAAGgtatgcttctatatactgcagagctagctaagtcatgtttgttgtttacctttcacgcgcatttcctttaaatatgcaaatgaaaaaactgtcagagagtgatgacatgtatttacaaacaatttgcatttaatttcag
- AAAGAA
- - AAGAAA
- - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - AAGAAA