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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCTCCACGGCCGGGTTCTTCGTCACCGACTTCCTGCAGTACAACCAGGTCTCCGGCGATGGCCAGACCACGCCGGCCAATGCCAGCGTCTCATTCGGgtgagccttttctcttctcaggcgaaaaaacgaaaagaaaaacaaaaaaaaaactagcatgtgtggatggaaatcggtgtgaaaaaccttctgaaagcgatgccaagatctgggggtctcccctctgtcgtgatttgcag

Basic information

species Oryza sativa
transcript LOC_Os02g27360.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g27360.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G473204_T01 (Zea mays), 5'ss of exon 3
GGAGCTCCACGGCCGGGTTCTTCGTCACCGACTTCCTGCAGTACAACCAGGTCTCCGGCGATGGCCAGACCACGCCGGCCAATGCCAGCGTCTCATTCGGgtgagccttttctcttctcaggcgaaaaaacgaaaagaaaaacaaaaaaaaaactagcatgtgtggatggaaatcggtgtgaaaaaccttctgaaagcgatgccaagatctgggggtctcccctctgtcgtgatttgcag
||||||||||| |||| |||| |||||| || ||| |||||||||| ||||| |||||| ||||||||||||| ||| |||| | |||| || | || |||||||    ||         || ||  ||  | |        |      |  |||  | |  || |||      || | |       || | |                                               
GGAGCTCCACGACCGGCTTCTACGTCACAGATTTCGTGCAGTACAATCAGGTGTCCGGCAATGGCCAGACCACCCCGTCCAACGTCAGCATCACGTTTGGgtgagagcctt--------gggggagcaagtgcacctggc--ctgggggaccact--cgtccgttgattctg-ccgctctttccgtgctgcag-----------------------------------------------

upper sequence: LOC_Os02g27360.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G411333_T01 (Zea mays), 5'ss of exon 3
GGAGCTCCACGGCCGGGTTCTTCGTCACCGACTTCCTGCAGTACAACCAGGTCTCCGGCGATGGCCAGACCACGCCGGCCAATGCCAGCGTCTCATTCGGgtgagccttttctcttctcaggcgaaaaaacgaaaagaaaaacaaaaaaaaaactagcatgtgtggatggaaatcggtgtgaaaaaccttctgaaagcgatgccaagatctgggggtctcccctctgtcgtgatttgcag
||||| | ||  |||| |||| |||||| |||||| |||||||||||||||| |||||| | |||||||||||  || ||||||||||| || | || |||||||||||||         ||   ||   |    |      ||    |  |     | | |||    |    |   |         |||||      | | |                                     
GGAGCACAACCACCGGCTTCTACGTCACAGACTTCGTGCAGTACAACCAGGTGTCCGGCAACGGCCAGACCACCACGTCCAATGCCAGCATCACCTTTGGgtgagcctttt---------ggaacaagtgcctgcacctggccaggggaccact---cgtttgtactcgtccgttaattctgcctctcttctcgttatgcttctgcag--------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29664886|gb|CB661161.1|CB661161
EST:     GTCTCCGGCGATGGCCAGACCACGCCGGCCAATGCCAGCGTCTCATTCGG                         GTGTGGTGCTAAGCTGG
genomic: GTCTCCGGCGATGGCCAGACCACGCCGGCCAATGCCAGCGTCTCATTCGGgtgagccttt ... tgatttgcagGTGTGGTGCTAAGCTGG
EST: gi|55410715|gb|CV723091.1|CV723091
EST:     GTCTCCGGCGATGGCCAGACCACGCCGGCCAATGCCAGCGTCTCATTCGG                         GTGTGGTGCTAAGCTGGGTGGGGATTTGGGGTCGTCAAACCTGGCACTCGA
genomic: GTCTCCGGCGATGGCCAGACCACGCCGGCCAATGCCAGCGTCTCATTCGGgtgagccttt ... tgatttgcagGTGTGGTGCTAAGCTGGGTGGGGATTTGGGGTCGTCAAACCTGGCACTCGA