1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACTCGGGGAAGACGACGATCGTGCTCAAGATCAATGGGGAGGATACCGGCGTCATCAGCCCCACCCTCGGCTTCAACATCAAGACCATCAAGTACCACAAgtatgagtcccatcggtcctcttctgtcgctcttactgctgcattattatgatgtaaacttgctttcggtaaggtgattttttcatgtgaaatgatgggc...
species | Oryza sativa |
transcript | LOC_Os02g22140.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTCATCAGCCCCACCCTCGGCTTCAACATCAAGACCATCAAGTACCACAA GTACTCATTGAACATATGGGATATCGGTGGACAGAAGACTATCCGATCTTAEST: gi|218480621|gb|FG956869.1|FG956869
genomic: GTCATCAGCCCCACCCTCGGCTTCAACATCAAGACCATCAAGTACCACAAgtatgagtcc ... attgtggcagGTACTCATTGAACATATGGGATATCGGTGGACAGAAGACTATCCGATCTTA
EST: CCATCAAGTACCACAA GTACTCATTGAACATATGGGATATCGGTGGACAGAAGACTATCCGATCTTAEST: gi|86855702|gb|CI269029.1|CI269029
genomic: CCATCAAGTACCACAAgtatgagtcc ... attgtggcagGTACTCATTGAACATATGGGATATCGGTGGACAGAAGACTATCCGATCTTA
EST: GTCATCAGCCCCACCCTCGGCTTCAACATCAAGACCATCAAGTACCACAA GTACTCATTGAACATATGGGATATCGGTGGACAGAAGACTATCCGATCTTAEST: gi|88850497|gb|CI093178.1|CI093178
genomic: GTCATCAGCCCCACCCTCGGCTTCAACATCAAGACCATCAAGTACCACAAgtatgagtcc ... attgtggcagGTACTCATTGAACATATGGGATATCGGTGGACAGAAGACTATCCGATCTTA
EST: GTCATCAGCCCCACCCTCGGCTTGAACATCAAGACCATCAAGTACCACAA GTACTCATTGAACATATGGGAAATCGGTGGACAGAAGACTATCCGATCTTAEST: gi|86428862|gb|CI075543.1|CI075543
genomic: GTCATCAGCCCCACCCTCGGCTTCAACATCAAGACCATCAAGTACCACAAgtatgagtcc ... attgtggcagGTACTCATTGAACATATGGGATATCGGTGGACAGAAGACTATCCGATCTTA
EST: ACCATCAAGTACCACAA GTACTCATTGAACATATGGGATATCGGTGGACAGAAGACTATCCGATCTTAEST: gi|86500170|gb|CI142803.1|CI142803
genomic: ACCATCAAGTACCACAAgtatgagtcc ... attgtggcagGTACTCATTGAACATATGGGATATCGGTGGACAGAAGACTATCCGATCTTA
EST: GTCATCAGCCCCACCCTCGGCTTCAACATCAAGACCATCAAGTACCACAA GTACTCATTGAACATATGGGATATCGGTGGACAGAAGACTATCCGATCTTA
genomic: GTCATCAGCCCCACCCTCGGCTTCAACATCAAGACCATCAAGTACCACAAgtatgagtcc ... attgtggcagGTACTCATTGAACATATGGGATATCGGTGGACAGAAGACTATCCGATCTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTCGGGGAAGACGACGATCGTGCTCAAGATCAATGGGGAGGATACCGGCGTCATCAGCCCCACCCTCGGCTTCAACATCAAGACCATCAAGTACCACAAgtatgagtcccatcggtcctcttctgtcgctcttactgctgcattattatgatgtaaacttgctttcggtaaggtgattttttcatgtgaaatgatgggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcttc