1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATTCATCGATGAGGTTGATGCTATAGCAACTGCTCGTTTTGATGCTCAGACTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggtttattgttgtaggatatctgtaagatacttgtggagaaactgaatatttgttgcttgttaaatttgaatagctcagccatacccatacattta...
species | Oryza sativa |
transcript | LOC_Os02g21970.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG ACGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACEST: gi|29656423|gb|CB652698.1|CB652698
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACEST: gi|11564715|gb|AU165351.1|AU165351
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: GTNCTGACCCGAGAAGTTCAGCGTATTTCTTATGGAACTACTCAAATCAG ATGGATGGATTTGATCAAAACAGTGAATGTGAAGNTTATAATGGCGACCCEST: gi|86501980|gb|CI144613.1|CI144613
genomic: GTGCTGA-CCGAGAAGTTCAGCGTA-TTCTTATGGAACTACTC-AATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATC-AAACAGTGAATGTGAAGGTTATAATGGCGA-CC
EST: CCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACEST: gi|88221302|gb|CI221258.1|CI221258
genomic: CCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: TACTCAATCAG ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACEST: gi|29624229|gb|CB629240.1|CB629240
genomic: TACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACEST: gi|29656424|gb|CB652699.1|CB652699
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACEST: gi|29683628|gb|CB679903.1|CB679903
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACEST: gi|25798027|gb|CA753988.1|CA753988
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACEST: gi|29636555|gb|CB641564.1|CB641564
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACEST: gi|29624298|gb|CB629309.1|CB629309
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACEST: gi|29624228|gb|CB629239.1|CB629239
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACEST: gi|86601860|gb|CI258536.1|CI258536
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACEST: gi|86495973|gb|CI138606.1|CI138606
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: TGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACEST: gi|29628786|gb|CB633797.1|CB633797
genomic: TGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACEST: gi|86503152|gb|CI145785.1|CI145785
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACEST: gi|29624299|gb|CB629310.1|CB629310
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCATCGATGAGGTTGATGCTATAGCAACTGCTCGTTTTGATGCTCAGACTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggtttattgttgtaggatatctgtaagatacttgtggagaaactgaatatttgttgcttgttaaatttgaatagctcagccatacccatacattta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT