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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACTACTGGCGCCTCCCCGCCGACGCCACCCTCAGGGACGTCGTCATGGTCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttccctcactccctcaccttgtgttggacgatgcatcatgtctcgcaatttcgaagcaaaacaaaaaggagaagaaatttgaacgaattttgctaactttgtccatggctgtggatgtgcag

Basic information

species Oryza sativa
transcript LOC_Os02g21300.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g21300.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ27318 (Selaginella moellendorffii), 5'ss of exon 3
CGACTACTGGCGCCTCCCCGCCGACGCCACCCTCAGGGACGTCGTCATGGTCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttccctcactccctcaccttgtgttggacgatgcatcatgtctcgcaatttcgaagcaaaacaaaaaggagaagaaatttgaacgaattttgctaactttgtccatggctgtggatgtgcag
|||||||||| | || ||    |||||||   || | ||||| |||   || ||||||||||||||||| |||||||| ||||| ||||||| |||  | ||| || ||      | |   |    | | |||    |  | |  || |    |   | |                                                                    
CGACTACTGGAGGCTGCCAAAGGACGCCAAGATCCGCGACGTTGTCCAAGTTGTCCGCGCCGACGAGGCTCACCACCGGGACGTGAACCACTTCGCAGCGgtaagcctcg---gatgcaagaagaagggatgggaattctaacgagtttgctcacgcccag-------------------------------------------------------------------

upper sequence: LOC_Os02g21300.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ35306 (Selaginella moellendorffii), 5'ss of exon 3
CGACTACTGGCGCCTCCCCGCCGACGCCACCCTCAGGGACGTCGTCATGGTCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttccctcactccctcaccttgtgttggacgatgcatcatgtctcgcaatttcgaagcaaaacaaaaaggagaagaaatttgaacgaattttgctaactttgtccatggctgtggatgtgcag
|||||||||| | || ||    |||||||   || | ||||| |||   || ||||||||||||||||| |||||||| ||||| ||||||| |||  | ||| || ||      | |   |    | | |||  | |  | |  || | ||     || ||                                                                  
CGACTACTGGAGGCTGCCAAAGGACGCCAAGATCCGCGACGTTGTCCAAGTTGTCCGCGCCGACGAGGCTCACCACCGGGACGTGAACCACTTCGCAGCGgtaagcctcg---gatgcaaaaagaagggatgggagttctaacgagttt-gctcacgcgcag------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88245804|gb|CI245653.1|CI245653
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88250878|gb|CI248729.1|CI248729
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88244742|gb|CI243864.1|CI243864
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|89186321|gb|CI262153.1|CI262153
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88244566|gb|CI243688.1|CI243688
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88250897|gb|CI248748.1|CI248748
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88248321|gb|CI248170.1|CI248170
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88971621|gb|CI388866.1|CI388866
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGCCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88243554|gb|CI243951.1|CI243951
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88247985|gb|CI247834.1|CI247834
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|86593498|gb|CI264377.1|CI264377
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88248540|gb|CI248389.1|CI248389
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88248320|gb|CI248169.1|CI248169
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCCCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88248811|gb|CI247895.1|CI247895
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCAATACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|87025611|gb|CI250031.1|CI250031
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88284260|gb|CI405706.1|CI405706
EST:     CGTCCGCGCCGACGAGGCCCACCACCGCGA-GTTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: CGTCCGCGCCGACGAGGCCCACCACCGCGACG-TCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88249245|gb|CI249094.1|CI249094
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88243144|gb|CI244266.1|CI244266
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC