1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGAAATACTTCTCGGATGATTGGTCTAGTAATGCGTCAAAGTTGGCCTTTGAAAAGTCTGTCTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAGgtatttcattcttagctttgttgcatgtgttatccctccataccatggcacatgcttttgccactttgacaatttggcacatcacacattctgcttcatg...
species | Oryza sativa |
transcript | LOC_Os02g21250.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAAAAGTCTGTCTTTACTAAAAC-CTGAAGACAAATGCACGCTCAGAAG CTGAGATAACATTGTTTGAEST: gi|163926048|gb|EG712328.1|EG712328
genomic: TGAAAAGTCTGTCTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAGgtatttcatt ... ttctctccagCTGAGATAACATTGTTTGA
EST: TGAAAAGTCTGTCTTTACTAAAACTCTGAAGACAAATGCACGCTCACAAG CTGAGATAACATTGTTTGATGGCTATATTGTCGTTTATAAGTTTGTACAAGEST: gi|88576575|gb|CI670720.1|CI670720
genomic: TGAAAAGTCTGTCTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAGgtatttcatt ... ttctctccagCTGAGATAACATTGTTTGATGGCTATATTGTCGTTTATAAGTTTGTACAAG
EST: TGAAAAGTCTGTCTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAG CTGAGATAACATTGTTTGAEST: gi|218496929|gb|FG959091.1|FG959091
genomic: TGAAAAGTCTGTCTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAGgtatttcatt ... ttctctccagCTGAGATAACATTGTTTGA
EST: TGAAAAGTCTGTCTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAG CTGAGATAACATTGTTTGATGGCTATATTGTCGTTTATAAGTTTGTACAAGEST: gi|163928617|gb|EG711178.1|EG711178
genomic: TGAAAAGTCTGTCTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAGgtatttcatt ... ttctctccagCTGAGATAACATTGTTTGATGGCTATATTGTCGTTTATAAGTTTGTACAAG
EST: TGAAAAGTCTGTCTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAG CTGAGATAACATTGTTTGATGGCTGTATTGTCGTTTATAAGTTTGTACAAGEST: gi|88243238|gb|CI244360.1|CI244360
genomic: TGAAAAGTCTGTCTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAGgtatttcatt ... ttctctccagCTGAGATAACATTGTTTGATGGCTATATTGTCGTTTATAAGTTTGTACAAG
EST: TGAAAAGTCTGTCTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAG CTGAGATAACATTGTTTGATGGCTATATTGTCGTTTATAAGTTTGTACAAGEST: gi|88572505|gb|CI664076.1|CI664076
genomic: TGAAAAGTCTGTCTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAGgtatttcatt ... ttctctccagCTGAGATAACATTGTTTGATGGCTATATTGTCGTTTATAAGTTTGTACAAG
EST: TGAAAAGTCTGTCTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAG CTGAGATAACATTGTTTGATGGCTATEST: gi|117248583|gb|CT862782.1|CT862782
genomic: TGAAAAGTCTGTCTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAGgtatttcatt ... ttctctccagCTGAGATAACATTGTTTGATGGCTAT
EST: TGAAAAGTCTGTCTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAG CTGAGATAACATTGTTTGATGGCTATATTGTCGTTTATAAGTTTGTACAAGEST: gi|163927524|gb|EG709956.1|EG709956
genomic: TGAAAAGTCTGTCTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAGgtatttcatt ... ttctctccagCTGAGATAACATTGTTTGATGGCTATATTGTCGTTTATAAGTTTGTACAAG
EST: TGAAAAGTCTGTCTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAG CTGAGATAACATTGTTTGATGGCTATATTGTCGTTTATAAGTTTGTACAAG
genomic: TGAAAAGTCTGTCTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAGgtatttcatt ... ttctctccagCTGAGATAACATTGTTTGATGGCTATATTGTCGTTTATAAGTTTGTACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAAATACTTCTCGGATGATTGGTCTAGTAATGCGTCAAAGTTGGCCTTTGAAAAGTCTGTCTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAGgtatttcattcttagctttgttgcatgtgttatccctccataccatggcacatgcttttgccactttgacaatttggcacatcacacattctgcttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccctcc