Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCTTGGCGGATCTTCAGAATGACGAGGATCAGGCTTACAGGAAGGTTAGACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatgagcattgattgttcattaatccttttgtgttgtatctgtgatcccttttgtcctatgtagtctaaaccaatacatattttctctag

Basic information

species Oryza sativa
transcript LOC_Os02g18550.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g18550.1 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv14s0030g01810.t01 (Vitis vinifera), 5'ss of exon 4
CTCCTTGGCGGATCTTCAGAATGACGAGGATCAGGCTTACAGGAAGGTTAGACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatgagcattgattgttcattaatccttttgtgttgtatctgtgatcccttttgtcctatgtagtctaaaccaatacatattttctctag
 ||| |||| ||||||||||| || |||||||| || ||||||||| |  ||||  | ||||||||||| || || | |||||||||||| || ||||||||  | || ||||| ||  |||      |  |||| |  | ||  ||  |               ||     |      |  ||| ||||     
TTCCCTGGCTGATCTTCAGAACGATGAGGATCATGCCTACAGGAAGATCCGACTGAGAGCTGAGGATGTGCAAGGAAAGAATGTCCTCACAAACTTCTGGgtgggcat-agcat-gacagttagcctttttttttttaat-tacatgcaaaagaggaaaattggggtttctcattttttttaataatttcag---

upper sequence: LOC_Os02g18550.1 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 3
CTCCTTGGCGGATCTTCAGAATGACGAGGATCAGGCTTACAGGAAGGTTAGACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaaga-----atgagcattgattgttcattaatccttttgtgttgtatctgtgatccctt-ttgtcctatgtagtctaaac--caatacatattttctctag---------------
||| ||||| || || ||||||||||| |||||||| | | | ||| |||  ||| | ||||||||||| ||||| | |||||||||||| || |||||||| ||       | |   |  ||| |||      || | |  |  |  | ||   ||  |   |||   ||||  | |  ||  |   || ||      | |                
CTCTTTGGCTGACCTGCAGAATGACGAAGATCAGGCCTTCCGCAAGATTAAGCTTAGGGCTGAGGATGTGCAGGGCAAGAATGTCCTCACCAACTTCTGGgtgagctcattgttaatgtacattattccgcctaccatatcagcagggtttgcattcaatcactgttgcatgtcctttccacggcggaacttacaagtgcgatactggaatgttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33687809|gb|CF316048.1|CF316048
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|88363507|gb|CI618068.1|CI618068
EST:     GACTTCGTGCTGAGGATGT-CAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGC
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGC
EST: gi|33802917|gb|CF327329.1|CF327329
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATAGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|3759951|gb|C97209.1|C97209
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|88673143|gb|CI727257.1|CI727257
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTA
EST: gi|4878474|gb|AU062773.1|AU062773
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|88342105|gb|CI644442.1|CI644442
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTAC
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTAC
EST: gi|88334936|gb|CI648711.1|CI648711
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAA
EST: gi|218504336|gb|FG960758.1|FG960758
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAGCTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|88328472|gb|CI676680.1|CI676680
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTCTTACCACGGACAAACTTAGGTC
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTC
EST: gi|4878343|gb|AU062642.1|AU062642
EST:     CTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTTGG
genomic: CTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCT-GG
EST: gi|88338339|gb|CI655528.1|CI655528
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCT
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCT
EST: gi|88670797|gb|CI724913.1|CI724913
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCA
EST: gi|218486263|gb|FG964022.1|FG964022
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAGCTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|58678754|gb|CK067441.1|CK067441
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAGCTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|33807193|gb|CF329477.1|CF329477
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|10794795|gb|AU108761.1|AU108761
EST:     TGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: TGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|33690861|gb|CF319100.1|CF319100
EST:     ACTTCGTGCTGAGGATGTTCAGGGGANGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: ACTTCGTGCTGAGGATGTTCAGGGGA-GGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|163918555|gb|EG714857.1|EG714857
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|33796645|gb|CF324190.1|CF324190
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|87006357|gb|CI293148.1|CI293148
EST:     GACTTCGTGCTGAGGATGTTCAGGCGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTC
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTC
EST: gi|702627|gb|D48918.1|D48918
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|218485395|gb|FG947740.1|FG947740
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAGCTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|428717|gb|D24869.1|D24869
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTT
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTT
EST: gi|88326139|gb|CI651194.1|CI651194
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTT
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTT
EST: gi|86887523|gb|CI294157.1|CI294157
EST:     GACTTCGTGCTGAGGATGTTCAGGCGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTT
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTT
EST: gi|88670179|gb|CI724295.1|CI724295
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTT
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTT
EST: gi|88728974|gb|CI752484.1|CI752484
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTT
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTT
EST: gi|55439670|gb|CV733145.1|CV733145
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|218491751|gb|FG947265.1|FG947265
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAGCTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|88400951|gb|CI684925.1|CI684925
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAG
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAG
EST: gi|88329520|gb|CI648582.1|CI648582
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGG
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGG
EST: gi|88308477|gb|CI650886.1|CI650886
EST:     ACTTCGCTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGCTCTACCACCGACAAACTTAGGTCCTTGG
genomic: ACTTCG-TGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGG
EST: gi|8324478|gb|AU091628.1|AU091628
EST:     CTTTCGTGCTNAAGGATGTTCAGGGAAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: C-TTCGTGCT-GAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|58682236|gb|CK070923.1|CK070923
EST:     GGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGAGAAGCTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|88576445|gb|CI670590.1|CI670590
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTC
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTC
EST: gi|88290442|gb|CI665231.1|CI665231
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|3768002|gb|AU032029.1|AU032029
EST:     GTCCTCACGAATTTCTGG                         GCCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATTGCAA
genomic: GTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|88380862|gb|CI634887.1|CI634887
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCT
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCT
EST: gi|88309215|gb|CI655223.1|CI655223
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAAC
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAAC
EST: gi|55437149|gb|CV731773.1|CV731773
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|58597856|gb|CK008384.1|CK008384
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAGCTTAGGTCCT
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCT
EST: gi|88581637|gb|CI698837.1|CI698837
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACC
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACC
EST: gi|117246664|gb|CT863247.1|CT863247
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAGCTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|88720549|gb|CI743848.1|CI743848
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTA
EST: gi|218484338|gb|FG944231.1|FG944231
EST:     TCGTGCTGAGGATGTTCAAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAGCTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: TCGTGCTGAGGATGTTC-AGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|56157462|gb|D48935.2|D48935
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|88569521|gb|CI660696.1|CI660696
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGG
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGG
EST: gi|58677313|gb|CK066000.1|CK066000
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAGCTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|58692409|gb|CK081096.1|CK081096
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAGCTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|33804300|gb|CF328024.1|CF328024
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|58662864|gb|CK051550.1|CK051550
EST:     GAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAGCTTAGGTCCTTGGTCAAGAAATGGCCA
genomic: GAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|88336441|gb|CI643254.1|CI643254
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTA
EST: gi|88335289|gb|CI650254.1|CI650254
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCA
EST: gi|58599545|gb|CK010073.1|CK010073
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAGCTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|568312|gb|D39155.1|D39155
EST:     ACTTCGTGCTTGAGGATGTTCAGGGGAGGAATGTCCTCACGGATTTCTTG                         GGCATGAGTTTT
genomic: ACTTCGTGCT-GAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTT
EST: gi|38477786|gb|CF961919.1|CF961919
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAGCTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|3766601|gb|AU030711.1|AU030711
EST:     CGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: CGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|33692843|gb|CF321082.1|CF321082
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|88575829|gb|CI669974.1|CI669974
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|88735488|gb|CI758996.1|CI758996
EST:     CACTTCGTGCTGAGGATGTNCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCANGGACAAACTTAGGTCCTTGGTCAAGAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAA
EST: gi|88302381|gb|CI668227.1|CI668227
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTA
EST: gi|88670183|gb|CI724299.1|CI724299
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAAC
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAAC
EST: gi|33687682|gb|CF315921.1|CF315921
EST:     ACTTCGTGCTGAGGATGTTCAGGGGANGGAATGTCCTCACGAATTTCTGG                         GGCATGAGTTTTACCACGGACAAACTTAGGTTCTTGGTCAAGAAATGGCAA
genomic: ACTTCGTGCTGAGGATGTTCAGGGGA-GGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA
EST: gi|88379044|gb|CI681875.1|CI681875
EST:     GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCCCGAATNTCTGG                         GGCATGAGTTTTACCACGGACCAACTTAGGTCCTTGGTCAAGAAATGGCAA
genomic: GACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 75 (downstream exon)
Score: 224

CTCCTTGGCGGATCTTCAGAATGACGAGGATCAGGCTTACAGGAAGGTTAGACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatga ... ttttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAAACATTGATTGAAGCCCATGTGGATGTTAAGACCACAGATAACTACATGC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCCTTGGCGGATCTTCAGAATGACGAGGATCAGGCTTACAGGAAGGTTAGACTTCGTGCTGAGGATGTTCAGGGGAGGAATGTCCTCACGAATTTCTGGgtaagaatgagcattgattgttcattaatccttttgtgttgtatctgtgatcccttttgtcctatgtagtctaaaccaatacatattttctctag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA