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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGGAAGTCAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAAgtgagttcattcttgctgttttcatcttaaacccttgtatttatgtgcagcaatcattggccttgcgcccttgccttttgatatcaactatatctctatagcttgctctcctttatgtgaacag

Basic information

species Oryza sativa
transcript LOC_Os02g15970.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g15970.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM5G819212_T01 (Zea mays), 5'ss of exon 3
---------------------------------------AAGAGGAAGTCAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAAgtgagttcattc-----ttgctgttttcatcttaaacccttgtatt----------tatgtgcagcaatcattggcct---------tgcgcccttgccttttgatatcaa--ctatatctctatagctt--------gctctcctttatgtgaacag
                                        |||||||||||| || || ||||||||  ||||||||||||||||||||||||||||| || ||||||||      |||| || |   | ||     | ||  |           | || | |  ||| |||  | |         || |  ||||| |||| | | |||  | || ||| ||||| ||        || || ||||  ||||||||
GCCTGCTTGACTACATTATGTGCATATTGTGATTCTCAGCAGAGGAAGTCAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAACgtaagttcatttgtagtttgcagtctgagtttttttttcctgcttcattcctgggatttgagaaataataattaacatcacaataattgtgaacttgc-ttttaagaacaatcccatttctatatagattaatcatcagccctgctttgcgtgaacag

upper sequence: LOC_Os02g15970.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM5G819212_T05 (Zea mays), 5'ss of exon 3
AAGAGGAAGTCAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAAgtgagttcattc-----ttgctgttttcatcttaaacccttgtatt----------tatgtgcagcaatcattggcct---------tgcgcccttgccttttgatatcaa--ctatatctctatagctt--------gctctcctttatgtgaacag
   |||||||||| || || ||||||||  ||||||||||||||||||||||||||||| || ||||||||      |||| || |   | ||     | ||  |           | || | |  ||| |||  | |         || |  ||||| |||| | | |||  | || ||| ||||| ||        || || ||||  ||||||||
---AGGAAGTCAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAACgtaagttcatttgtagtttgcagtctgagtttttttttcctgcttcattcctgggatttgagaaataataattaacatcacaataattgtgaacttgc-ttttaagaacaatcccatttctatatagattaatcatcagccctgctttgcgtgaacag

upper sequence: LOC_Os02g15970.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM5G819212_T02 (Zea mays), 5'ss of exon 3
AAGAGGAAGTCAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAAgtgagttcattc-----ttgctgttttcatcttaaacccttgtatt----------tatgtgcagcaatcattggcct---------tgcgcccttgccttttgatatcaa--ctatatctctatagctt--------gctctcctttatgtgaacag
 |||||||||||| || || ||||||||  ||||||||||||||||||||||||||||| || ||||||||      |||| || |   | ||     | ||  |           | || | |  ||| |||  | |         || |  ||||| |||| | | |||  | || ||| ||||| ||        || || ||||  ||||||||
CAGAGGAAGTCAAAGATTTTGGAGTCAATATGGCACTATCCATGCTAAAATTTTACAAACgtaagttcatttgtagtttgcagtctgagtttttttttcctgcttcattcctgggatttgagaaataataattaacatcacaataattgtgaacttgc-ttttaagaacaatcccatttctatatagattaatcatcagccctgctttgcgtgaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30227684|gb|CB965576.1|CB965576
EST:     CAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAA                         GAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCA
genomic: CAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAAgtgagttcat ... atgtgaacagGAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCA
EST: gi|426017|gb|D22705.1|D22705
EST:     CAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAA                         GAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCA
genomic: CAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAAgtgagttcat ... atgtgaacagGAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCA
EST: gi|33687072|gb|CF315311.1|CF315311
EST:     CAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAA                         GAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCA
genomic: CAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAAgtgagttcat ... atgtgaacagGAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCA
EST: gi|86499914|gb|CI142547.1|CI142547
EST:     CAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAA                         GAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCA
genomic: CAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAAgtgagttcat ... atgtgaacagGAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCA
EST: gi|30227453|gb|CB965345.1|CB965345
EST:     CAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAA                         GAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCA
genomic: CAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAAgtgagttcat ... atgtgaacagGAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCA