Sequence
atgc intronic sequence ATGC exonic sequenceGGTCCCTGCAAAGTTTGAGTTCATGACAAGACGTAAAGGGCACTCGAGAGTCATGGAATCGATAGATGCTTCTATACAACTTGGATTCCAATCTGTCAAGgtatgcagatttttgcatacctgaaatttctgcagtttgtcttctttttaacataccacaaactggagctatatccgcatcatattgagcatttatcctcagtttaattggttctttttccctttttctgctgccag
Basic information
species | Oryza sativa |
transcript | LOC_Os02g15870.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os02g15870.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G135816_T01 (Zea mays), 5'ss of exon 2
GGTCCCTGCAAAGTTTGAGTTCATGACAAGACGTAAAGGGCACTCGAGAGTCATGGAATCGATAGATGCTTCTATACAACTTGGATTCCAATCTGTCAAGgtatgcagatttttgcatacctgaaatttctgcagtt-tgtcttctttttaacataccacaaactggagctatatccgcatcatattgagcattta-tcctcagttt-aattggttctttttccctttttctgctg---ccag
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AGTACCTGCAAAGTTTGAGTTCATGACAAGGCGTAAAGGGCACTCAAAGGTCTTGGAATCAATAGATGCTGCTGTAGAACTTGGGTATAGCCCTGTTAAGgtatctagttttttgcatgc-tacaactcatgcaattctattaagtcaactgttttctctatgatggaaacatattc---tcaaaatgaacatctagtatttagttttgatcaattatttttgcccacttcttctatacccag
upper sequence: LOC_Os02g15870.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA08G16780.1 (Glycine max), 5'ss of exon 2
GGTCCCTGCAAAGTTTGAGTTCATGACAAGACGTAAAGGGCACTCGAGAGTCATGGAATCGATAGATGCTTCTATACAACTTGGATTCCAATCTGTCAAGgtatgcagatttttgcatacctgaaatttctgcagtttgtcttctttttaacataccacaaactggagctatatccgcatcatattgagcat-ttatcctcagtttaattggttctttttccctttttctgctgccag
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AGTACCAGCAAAGTTTGAGTTTATGACAAGACGCAAAGGGCATGAAAAAGTAATGGATTCAATTAATGCAGCCATAGACCTTGGATTTAATCCAGTTAAGgtatttct-tggtcttatattattactttttgcaagttttcttctttt-atcaccttcccatgagcagctaccttttttccaaattcattaagttattcgaa------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29675363|gb|CB671638.1|CB671638EST: CATGGAATCGATAGATGCTTCTATACAACTTGGGATTCCAATCTGTCAAG GTCNACTGCGTTGTCATGCGTGGAATGAATGAT
genomic: CATGGAATCGATAGATGCTTCTATACAACTTGG-ATTCCAATCTGTCAAGgtatgcagat ... ctgctgccagGTCAACTGCGTTGTCATGCGTGGAATGAATGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTCCCTGCAAAGTTTGAGTTCATGACAAGACGTAAAGGGCACTCGAGAGTCATGGAATCGATAGATGCTTCTATACAACTTGGATTCCAATCTGTCAAGgtatgcagatttttgcatacctgaaatttctgcagtttgtcttctttttaacataccacaaactggagctatatccgcatcatattgagcatttatcctcagtttaattggttctttttccctttttctgctgccag
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