Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAGATTGTCAAGCTTGAGAACTTCCCGTACTTGAATCGTCTTGGCACTCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTGgtaagattatatattttatcttgttatgatctgtttatcattttcataattttgctccagaacttaccttcagttgctcctgtttctag

Basic information

species Oryza sativa
transcript LOC_Os02g13990.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g13990.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G021742_T01 (Zea mays), 5'ss of exon 3
AATGAGATTGTCAAGCTTGAGAACTTCCCGTACTTGAATCGTCTTGGCACTCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTGgtaagattatatattttatcttgttatgatctgtttatcattttcataattttgctccagaacttaccttcagttgctcctgtttctag----
|||||||||||||||||||| |||||||| |||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||| |||||||       |  | | || | |  |  ||||| ||    ||  |  |||||||||    | |||||   |      | |||| |     
AATGAGATTGTCAAGCTTGAAAACTTCCCATACTTGAATCGTCTTGGCACTCTACTAGTTAATAATAACAGAATCACACGTATCAATCCCAATCTTGGCGgtaagaac-----tcctgtattctcagcacttgttt-tctgactcccacatttgctccatgcttcaccttttttcttgtttttttccatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218492413|gb|FG947005.1|FG947005
EST:     TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTG                         AGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAA
genomic: TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTGgtaagattat ... ctgtttctagAGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAA
EST: gi|29681478|gb|CB677753.1|CB677753
EST:     TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTG                         AGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAA
genomic: TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTGgtaagattat ... ctgtttctagAGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAA
EST: gi|86904173|gb|CI306591.1|CI306591
EST:     TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTG                         AGTTCTTGCCAAAGTTACATACATTGGTGCTTACA
genomic: TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTGgtaagattat ... ctgtttctagAGTTCTTGCCAAAGTTACATACATTGGTGCTTACA
EST: gi|58602112|gb|CK012640.1|CK012640
EST:     TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTG                         AGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAA
genomic: TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTGgtaagattat ... ctgtttctagAGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAA
EST: gi|58662231|gb|CK050911.1|CK050911
EST:     TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTG                         AGTTCTTGCCAAAGTTACATACATAGGTGCTTACAAACAATCGTCTTACAA
genomic: TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTGgtaagattat ... ctgtttctagAGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAA