Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATCTTCTGATGTGGTGCTGGTCACTGGAGCTACCGGTGGCGTTGGACGAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTGgtacaatacttgtcaagcttatctacttttggcttctctgttttcattcattattacatggatagtccaacttctccctcttttgttggatctttgctgctcttaatgttgatctaacatttcaaatttcaattcag

Basic information

species Oryza sativa
transcript LOC_Os02g13970.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g13970.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G019358_T06 (Zea mays), 5'ss of exon 3
GGAATCTTCTGATGTGGTGCTGGTCACTGGAGCTACCGGTGGCGTTGGACGAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTGgtacaatacttgtcaagcttatctacttttggcttctctgttttcattcattattacatggatagtccaacttctccctcttttgttggatctttgctgctcttaatgttgatctaacatttcaaatttcaattcag
|||| | || |||||||||||||| |||||||| |||||||| ||||| ||| | ||||| ||  |||||| ||| |||||| |||| |||||||||||||||   |||| ||||| | ||   || || | |||     ||||      || ||  ||| |     ||| | || |   | ||||   || | | |   | ||   |                             
GGAAACGTCGGATGTGGTGCTGGTTACTGGAGCCACCGGTGGTGTTGGGCGACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTGgtattctact-gtcaaccatactcacattggccttgaacatttttccatttttttgtatgaa-----caattcctacagttcttgtgccatttgttccattttttgag-----------------------------

upper sequence: LOC_Os02g13970.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G019358_T01 (Zea mays), 5'ss of exon 3
GGAATCTTCTGATGTGGTGCTGGTCACTGGAGCTACCGGTGGCGTTGGACGAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTGgtacaatacttgtcaagcttatctacttttggcttctctgttttcattcattattacatggatagtccaacttctccctcttttgttggatctttgctgctcttaatgttgatctaacatttcaaatttcaattcag
|||| | || |||||||||||||| |||||||| |||||||| ||||| ||| | ||||| ||  |||||| ||| |||||| |||| |||||||||||||||   |||| ||||| | ||   || || | |||     ||||      || ||  ||| |     ||| | || |   | ||||   || | | |   | ||   ||| |                         
GGAAACGTCGGATGTGGTGCTGGTTACTGGAGCCACCGGTGGTGTTGGGCGACGGGTGGTGGACGTCCTGCAGAAGAAGGGAGTACCTGTTCGAGTATTGgtattctact-gtcaaccatactcacattggccttgaacatttttccatttttttgtatgaa-----caattcctacagttcttgtgccatttgttccattttttgagttcag------------------------

upper sequence: LOC_Os02g13970.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA05G29330.1 (Glycine max), 5'ss of exon 3
GGAATCTTCTGATGTGGTGCTGGTCACTGGAGCTACCGGTGGCGTTGGACGAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTGgtacaatacttgtcaagcttatctacttttggcttctctgttttcattcattattacatggatagtccaacttctccctcttttgttggatctttgctgctcttaatgttgatctaacatttcaaatttcaattcag----
|| | |||||||| | || |||||  ||||||| || ||||||||||| ||||| |||||||| ||  | ||||| || ||||| || || ||||||||||||      ||||   | | |  ||| ||  |||     |     | | ||    | |   |   |  || || ||  ||| ||  |   |   | | || | |||     |  | |||||||    |  ||||       
GGGAACTTCTGATATTGTCCTGGTAGCTGGAGCCACTGGTGGCGTTGGTCGAAGGGTGGTTGACATATTACGGAAGAAAGGAATTCCAGTCCGAGTATTGgta------ttgtt--gttaacttacctt--gctgacaagagaaaaat-atagaaaaaaaaagcttagaaattttcgttctgttaattatttaattcagcgcataaca--aacattacatttctgtatcaaattttatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29626259|gb|CB631270.1|CB631270
EST:     GAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTG                         GCTAGAAATGAAGAGAAGGCGAGGAGCATGCTGGGGCCCGATGTAGACTTG
genomic: GAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTGgtacaatact ... ttcaattcagGCTAGAAATGAAGAGAAGGCGAGGAGCATGCTGGGGCCCGATGTAGACTTG
EST: gi|88389138|gb|CI597936.1|CI597936
EST:     GAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTG                         GCTAGAAATGAAGAGAAGGCGAGGAGCATGCTGGGGCCCGATGTACACTTG
genomic: GAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTGgtacaatact ... ttcaattcagGCTAGAAATGAAGAGAAGGCGAGGAGCATGCTGGGGCCCGATGTAGACTTG
EST: gi|29623795|gb|CB628806.1|CB628806
EST:     GAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTG                         GCTAGAAATGAAGAGAAGGCGAGGAGCATGCTGGGGCCCGATGTAGACTTG
genomic: GAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTGgtacaatact ... ttcaattcagGCTAGAAATGAAGAGAAGGCGAGGAGCATGCTGGGGCCCGATGTAGACTTG
EST: gi|58696226|gb|CK084913.1|CK084913
EST:     GAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTG                         GCTAGAAATGAAGAGAAGGCGAGGAGCATGCTGGGGCCCGATGTAGACTTG
genomic: GAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTGgtacaatact ... ttcaattcagGCTAGAAATGAAGAGAAGGCGAGGAGCATGCTGGGGCCCGATGTAGACTTG