Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCCCTATTCTTGATCTAGTGGCTGGATCAATAGCTGGTGGAACAGCTGTCATATGCACATACCCTCTTGATCTAGTTCGCACAAAGTTGGCTTATCAGgttggtcttacaccttgcacccttcattccagaggaaatcacacttcttcaagggagatttcaagctgctcctgatgtatcacacattaacaagctctct...

Basic information

species Oryza sativa
transcript LOC_Os02g13300.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g13300.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G161299_T01 (Zea mays), 5'ss of exon 3
AGGCCCTATTCTTGATCTAGTGGCTGGATCAATAGCTGGTGGAACAGCTGTCATATGCACATACCCTCTTGATCTAGTTCGCACAAAGTTGGCTTATCAGgttggtctta---caccttgcacccttcattccagaggaaa-tcacacttcttcaagggagatttcaagctgctcctgatgtatcacacattaacaagctctct-----------------------------------------------------------------------------------
||| ||| |||||||||| |||||||| || |||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||   |   |  |||||| |||||  |  |  |||||  |||||||||    |   || |||||| | |   || |||||     || ||||   | |                                                                                     
AGGGCCTGTTCTTGATCTCGTGGCTGGCTCTATAGCTGGAGGGACAGCTGTCATATGCACATACCCTCTTGATCTAGTCCGCACAAAGTTGGCTTATCAGgttggttcgaatccttcttgcatccttcgctaaactggaaaaccacacttct----gttggaattcaagttacatttgctgtattgtgtatcaacataattttcgaataaggatttggttagcataagcacatatgtccttttcttttgattctcaatatctttctaattagttattgtctgcgcag

upper sequence: LOC_Os02g13300.2 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv11s0016g02470.t01 (Vitis vinifera), 5'ss of exon 3
AGGCCCTATTCTTGATCTAGTGGCTGGATCAATAGCTGGTGGAACAGCTGTCATATGCACATACCCTCTTGATCTAGTTCGCACAAAGTTGGCTTATCAGgttggtcttacaccttgcacccttcattccagaggaaatcacacttcttcaagggagatttcaagctgctcctgatgtatcacacattaacaagctctct
||| ||  | || |||||  |||| |||||| | || || ||||| |||||  | |  ||||||||||||||||||||||| || || |||||||| |||||       | | |||  |||  |  ||          || || | ||| || |||||     ||    |  |     ||    ||              
AGGGCCAGTACTCGATCTCATGGCAGGATCATTTGCAGGAGGAACTGCTGTGCTTTTTACATACCCTCTTGATCTAGTTCGGACCAAATTGGCTTACCAGgtaa-----agaacttaaaccgattctt----------tctcaatgcttgaatggagaacatgagtaagttgtatatgattttgcag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|300215830|gb|HO088456.1|HO088456
EST:     TCATATGCACATACCCTCTTGATCTAGTTCGCACAAAGTTGGCTTATCAG                         GTTAAAGGTGCAGTGAAACTTAGTTTAAGAGAATATAAGCCCTCTGAACAG
genomic: TCATATGCACATACCCTCTTGATCTAGTTCGCACAAAGTTGGCTTATCAGgttggtctta ... ttatctgcagGTTAAAGGTGCAGTGAAACTTAGTTTAAGAGAATATAAGCCCTCTGAACAG