Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCGAGTACTCTGGTGTCAAGGTTGAGTTGGCAAAGAACTTTCAGATGGGTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaaaaccacctctgaattttggtacatttgcacagaatctgatttggacacgtttcctttcag

Basic information

species Oryza sativa
transcript LOC_Os02g12800.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g12800.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G029559_T02 (Zea mays), 5'ss of exon 3
TGCCGAGTACTCTGGTGTCAAGGTTGAGTTGGCAAAGAACTTTCAGATGGGTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaaaaccacctctg----aattttggtacatttgcacagaatctgatttggacacgtttcctttcag
 || || |||   ||  ||||||||||||||| |||  ||||||| ||||| || |||||||| || || ||||  ||||||||||| |||||||||||||| | |  ||  |    | ||     ||  || || | | |   || || | |||||| |  | ||| || |||
CGCGGATTACAGCGGCATCAAGGTTGAGTTGGTAAAAGACTTTCAAATGGGGGTTTCCAACAAAACACCAGAGTTCCTCAAGATGAACCCTATTGGGAAGgtataaaaaattctgtatatgttaagatggtgata-aatagtctaggatgtaatttgggc--gcttctttgcag

upper sequence: LOC_Os02g12800.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G320497_T01 (Zea mays), 5'ss of exon 3
TGCCGAGTACTCTGGTGTCAAGGTTGAGTTGGCAAAGAACTTTCAGATGGGTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaaaacc---acctctgaattttggtac---atttgcacagaatctgatttggacacgtttcctttcag
 || || |||   |||||||||||||||||||  ||| ||||||| ||||||||||||||||| ||||| ||||  ||||||||||| |||||||||||||| |||  ||||||   |  | | |||   |  |    | | |  ||| || | |||  | ||   ||| ||  ||
CGCAGAATACAGCGGTGTCAAGGTTGAGTTGGTGAAGGACTTTCAAATGGGTGTCTCCAACAAAACTCCAGAGTTCCTCAAGATGAACCCTATTGGGAAGgtatgaaaaaaacctgtatatgttaataaggtgatcggaatagtccaggatgtaattcaggca--attctttgtag

upper sequence: LOC_Os02g12800.1 (Oryza sativa), 5'ss of exon 3
lower sequence: AT1G09640.1 (Arabidopsis thaliana), 5'ss of exon 3
TGCCGAGTACTCTGGTGTCAAGGTTGAGTTGGCAAAGAACTTTCAGATGGGTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaaaaccacctctgaattttggtacattt--gcacagaatctgatttggacacgtttcctttcag-----------------------
 || ||||||  ||||||  || | ||  || |     ||||||||||||||||| | ||||| || |||| ||  ||||||||||| |||||||| ||||||||        || | |||   |||| || ||||  | || || | | |||  | |   ||| |    |                        
AGCAGAGTACGTTGGTGTGCAGATCGATGTGCCCTCTGACTTTCAGATGGGTGTCACTAACAAAACCCCTGCGTTCCTCAAGATGAACCCTATTGGAAAGgtttg-------tcatcactggtgtttgctaaatttctggactgagtattattaagtctatttttcagctaaccaagagttattgatcttgctag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88675649|gb|CI729762.1|CI729762
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88973473|gb|CI717901.1|CI717901
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88593431|gb|CI713385.1|CI713385
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88351346|gb|CI627362.1|CI627362
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCC-TATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88730660|gb|CI754273.1|CI754273
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88402796|gb|CI613244.1|CI613244
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88389743|gb|CI626512.1|CI626512
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88354432|gb|CI624822.1|CI624822
EST:     TGTCTCCAACCAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: TGTCTCCAAC-AAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88972508|gb|CI717248.1|CI717248
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88724690|gb|CI747949.1|CI747949
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|33656262|gb|CF278876.1|CF278876
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCGAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|58685364|gb|CK074051.1|CK074051
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGTGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88722148|gb|CI745658.1|CI745658
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|29678878|gb|CB675153.1|CB675153
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88391242|gb|CI595496.1|CI595496
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88668271|gb|CI723010.1|CI723010
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGAATCCTGATGGTCCTGTNTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88372777|gb|CI612705.1|CI612705
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88314792|gb|CI608251.1|CI608251
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88357098|gb|CI615985.1|CI615985
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|58599056|gb|CK009584.1|CK009584
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGTGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|58663459|gb|CK052145.1|CK052145
EST:     ATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGTGATT
genomic: ATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88325783|gb|CI648228.1|CI648228
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88356851|gb|CI619337.1|CI619337
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTACAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88430785|gb|CI596899.1|CI596899
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|58663492|gb|CK052178.1|CK052178
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGTGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|58656426|gb|CK045106.1|CK045106
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGTGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88314623|gb|CI606691.1|CI606691
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88370228|gb|CI585233.1|CI585233
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88668076|gb|CI722815.1|CI722815
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|14571342|gb|BI118710.1|BI118710
EST:     GTGTCTCCAACAAGACTCCTGAGTAACTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGTGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88668759|gb|CI719716.1|CI719716
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|58607460|gb|CK035493.1|CK035493
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGTGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88370462|gb|CI587852.1|CI587852
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88412219|gb|CI573495.1|CI573495
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88731450|gb|CI755063.1|CI755063
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88363687|gb|CI609044.1|CI609044
EST:     TGTCTCCAACAAGACCTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCC-TATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: TGTCTCCAACAAGAC-TCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88423568|gb|CI579280.1|CI579280
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|58652610|gb|CK041290.1|CK041290
EST:     GTGTCTCCAACAAGACTCGGGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGTGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|5667502|gb|AU077471.1|AU077471
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|58652699|gb|CK041379.1|CK041379
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGTGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88430286|gb|CI567305.1|CI567305
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88362359|gb|CI606549.1|CI606549
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|58673852|gb|CK062538.1|CK062538
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGTGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88727710|gb|CI749512.1|CI749512
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88668655|gb|CI719612.1|CI719612
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88392598|gb|CI625420.1|CI625420
EST:     TGTCTCCAACAAGACTCCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTGGAAAGCAATGCGATT
genomic: TGTCTCCAACAAGACTCC-TGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|33795619|gb|CF323679.1|CF323679
EST:     TGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCNTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: TGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCC-TATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88395559|gb|CI613081.1|CI613081
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|33797146|gb|CF324438.1|CF324438
EST:     TGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGCGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGAT
genomic: TGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTG-GGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGAT
EST: gi|88372833|gb|CI597136.1|CI597136
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88422993|gb|CI615293.1|CI615293
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|33687433|gb|CF315672.1|CF315672
EST:     TGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGNGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGAT
genomic: TGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTG-GGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGAT
EST: gi|88391164|gb|CI595418.1|CI595418
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88674113|gb|CI728226.1|CI728226
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88676535|gb|CI730648.1|CI730648
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88362086|gb|CI607086.1|CI607086
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTACAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88673829|gb|CI727942.1|CI727942
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88359484|gb|CI621015.1|CI621015
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88668453|gb|CI722319.1|CI722319
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88677135|gb|CI731248.1|CI731248
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88391578|gb|CI600767.1|CI600767
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|58653428|gb|CK042108.1|CK042108
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGTGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88677083|gb|CI731196.1|CI731196
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88357209|gb|CI616096.1|CI616096
EST:     TGTCTCCAACCAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: TGTCTCCAAC-AAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88719721|gb|CI743231.1|CI743231
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88668186|gb|CI722925.1|CI722925
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88665785|gb|CI715941.1|CI715941
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88397790|gb|CI583108.1|CI583108
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88904944|gb|CI712243.1|CI712243
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88726584|gb|CI750239.1|CI750239
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTACAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88314933|gb|CI609992.1|CI609992
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|58681115|gb|CK069802.1|CK069802
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGTGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88667046|gb|CI719182.1|CI719182
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
EST: gi|88426801|gb|CI584164.1|CI584164
EST:     GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAG                         GTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT
genomic: GTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaa ... ttcctttcagGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGCGATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCCGAGTACTCTGGTGTCAAGGTTGAGTTGGCAAAGAACTTTCAGATGGGTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGgtttgagcaaaaccacctctgaattttggtacatttgcacagaatctgatttggacacgtttcctttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG