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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACGGTAGGAGACTACACCGACTTCTTTTGTTCTGTGCACCATGCAAGGAATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtattttcttgaccatgccttgtgctgagacttgagacttgggttttgacataaacactaatctgcaatgtatgtttgcttcatcag

Basic information

species Oryza sativa
transcript LOC_Os02g10310.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g10310.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G093359_T02 (Zea mays), 5'ss of exon 4
TCACGGTAGGAGACTACACCGACTTCTTTTGTTCTGTGCACCATGCAAGGAATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtattttct-tgaccatgccttgtgctgagacttgagacttgggttttgacataaacactaatc--tgcaatgtatgtttgcttcatcag-----
||||||| ||||  ||||| || ||||||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| ||||| || ||||||||||||||| |||||| |||  |||   | |  || || ||| |              | |    |   ||  | || |         |   || ||     
TCACGGTTGGAGGTTACACAGATTTCTTTTGTTCTGTGCACCATGCAAGGAACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgttttctctgataatgtgctttattgggatttgtggggaacaaaacaggagagctgcgtgtcatttcattaagaagaaacgaaattagtaaca

upper sequence: LOC_Os02g10310.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G029566_T02 (Zea mays), 5'ss of exon 3
TCACGGTAGGAGACTACACCGACTTCTTTTGTTCTGTGCACCATGCAAGGAATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtattttcttg-accatgccttgtgctgagacttgagacttgggttttgacataaacactaatctgcaatgtatgtt--tgcttcatcag------
||||||| ||||  ||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| ||||| |||||||| ||||||||||| ||| |||||| | |  |||   | || ||  | ||  |              ||    |  | |    |    ||  |  ||  | |  |       
TCACGGTTGGAGGTTACACGGACTTCTTTTGTTCTGTGCACCATGCAATGAATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgta-tgtgttttctcggataatgtgctttgttggcatttaggggagcaaaagcagtatgttaatcagttgagatcagatcctgttgtctgaatattcttgc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58597665|gb|CK008193.1|CK008193
EST:     AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTG                         GTTTCAGCTTCCAGTAGGTTATCATGGT
genomic: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtatt ... gcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGT
EST: gi|29643533|gb|CB648540.1|CB648540
EST:     AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTG                         GTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
genomic: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtatt ... gcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
EST: gi|88324389|gb|CI566202.1|CI566202
EST:     AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTG                         GTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
genomic: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtatt ... gcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
EST: gi|4969133|gb|AU066037.1|AU066037
EST:     AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTG                         GTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
genomic: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtatt ... gcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
EST: gi|27548667|gb|CA766758.2|CA766758
EST:     AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTG                         GTTTCAGCTTCCAATAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
genomic: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtatt ... gcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC