1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttgatcaactactcttttctttgttacgagaaacaggatgaccatttatgaaatcactaacttctctgtttttatcatttag
species | Oryza sativa |
transcript | LOC_Os02g10310.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG AGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCEST: gi|29664839|gb|CB661114.1|CB661114
genomic: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttga ... tatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTC
EST: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG AGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCEST: gi|29636596|gb|CB641605.1|CB641605
genomic: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttga ... tatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTC
EST: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG AGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCEST: gi|29672586|gb|CB668861.1|CB668861
genomic: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttga ... tatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTC
EST: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG AGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCEST: gi|58597665|gb|CK008193.1|CK008193
genomic: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttga ... tatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTC
EST: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG AGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCEST: gi|29637361|gb|CB642370.1|CB642370
genomic: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttga ... tatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTC
EST: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG AGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCEST: gi|29672143|gb|CB668418.1|CB668418
genomic: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttga ... tatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTC
EST: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG AGCGACACATAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCEST: gi|29671042|gb|CB667317.1|CB667317
genomic: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttga ... tatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTC
EST: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG AGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCEST: gi|29636551|gb|CB641560.1|CB641560
genomic: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttga ... tatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTC
EST: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG AGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCEST: gi|29643533|gb|CB648540.1|CB648540
genomic: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttga ... tatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTC
EST: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG AGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCEST: gi|4969133|gb|AU066037.1|AU066037
genomic: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttga ... tatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTC
EST: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG AGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCEST: gi|25798439|gb|CA754400.1|CA754400
genomic: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttga ... tatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTC
EST: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG AGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCEST: gi|58660309|gb|CK048989.1|CK048989
genomic: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttga ... tatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTC
EST: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG AGCGACACAGAGATTGCTTCTGCCAATCACGGTAGGAGACTACACCGACTT
genomic: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttga ... tatcatttagAGCGACACAGAGAT-GCTTCTGCCAATCACGGTAGGAGACTACACCGACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttgatcaactactcttttctttgttacgagaaacaggatgaccatttatgaaatcactaacttctctgtttttatcatttag
- - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - AGAAGT