1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGTAAATGATGCTTTTGGCACTGCACACAGAGCTCATGCTTCAACTGAGGGAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaaaatgaagtctccatcctggtcaatgtttgcttaaatatatattcctagtaatacataggtcccgtggtaataactcataattaggaattg...
species | Oryza sativa |
transcript | LOC_Os02g07260.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCGEST: gi|27554292|gb|CA998192.1|CA998192
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCGEST: gi|33678660|gb|CF306899.1|CF306899
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCGEST: gi|58605824|gb|CK033857.1|CK033857
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCGEST: gi|29656603|gb|CB652878.1|CB652878
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCGEST: gi|14574908|gb|AU197198.1|AU197198
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCNTCCTGATGCAGAAG GAACTTTGACTATCTTTGTTGGGANCTGTTGCAAANCCAAAGAAGCCATTTEST: gi|13806339|gb|AU181481.1|AU181481
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTT-GACTATCTT-GTTGG-AGCTGTTGCAAACCCAAAGAAGCCATTT
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAA GAACTTGACTATCTTGTTGGAGCTGTTGCAA-CCCAAAGAAGCCATTTGCGEST: gi|33794797|gb|CF323278.1|CF323278
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCGEST: gi|58667980|gb|CK056666.1|CK056666
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
EST: TAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAEST: gi|300216018|gb|HO088644.1|HO088644
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAA
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCGEST: gi|163918048|gb|EG713148.1|EG713148
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCGEST: gi|13904803|gb|BF889441.1|BF889441
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAA GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCGEST: gi|29676664|gb|CB672939.1|CB672939
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCGEST: gi|33793275|gb|CF322518.1|CF322518
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCEST: gi|33690622|gb|CF318861.1|CF318861
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGG-AGCTGTTGCAAACCCAAAGAAGCCATTTGC
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCGEST: gi|33795493|gb|CF323616.1|CF323616
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCGEST: gi|33805002|gb|CF328378.1|CF328378
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCGEST: gi|86904967|gb|CI289114.1|CI289114
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCGEST: gi|427571|gb|D23639.1|D23639
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
EST: GGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCGEST: gi|29671336|gb|CB667611.1|CB667611
genomic: GGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCGEST: gi|32947941|gb|BP184513.1|BP184513
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAEST: gi|38478259|gb|CF962392.1|CF962392
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGA
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCGEST: gi|29656155|gb|CB652430.1|CB652430
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCGEST: gi|33679224|gb|CF307463.1|CF307463
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTEST: gi|29614437|gb|CB619450.1|CB619450
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCT
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCGEST: gi|4878615|gb|AU062914.1|AU062914
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
EST: GAGTTACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAGGAAGCCATTTGCGEST: gi|87020408|gb|CI263271.1|CI263271
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCGEST: gi|117247218|gb|CT848558.1|CT848558
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCGEST: gi|14574727|gb|AU197242.1|AU197242
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
EST: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAG GAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
genomic: GAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaa ... attatttcagGAACTTGACTATCTTGTTGGAGCTGTTGCAAACCCAAAGAAGCCATTTGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTAAATGATGCTTTTGGCACTGCACACAGAGCTCATGCTTCAACTGAGGGAGTGACCAAATTTTTGAAGCCTGCTGTTGCTGGCTTCCTGATGCAGAAGgtattgccaaaatgaagtctccatcctggtcaatgtttgcttaaatatatattcctagtaatacataggtcccgtggtaataactcataattaggaattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT