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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAACATACTGGCCAATTCAGACTGCAAACTGAAGATTTGTGATTTTGGACTTGCACGTGTAGCATTTAATGATTCACCTTCAACAATTTTTTGGACCgtacgactttattttctctataacataatttcccctgtaagattttcatagacttatactgtggtttgcaatttgaag

Basic information

species Oryza sativa
transcript LOC_Os02g04230.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g04230.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G374088_T01 (Zea mays), 5'ss of exon 3
AAAGAACATACTGGCCAATTCAGACTGCAAACTGAAGATTTGTGATTTTGGACTTGCACGTGTAGCATTTAATGATTCACCTTCAACAATTTTTTGGACCgtacgactttattttctctataacataatt--tcccctgtaagattttcatagactta--tactgtggtttgcaatttgaag
 | |||||||||||||||||||||| ||||||| ||||| || || |||||||||||||||| | ||||||| || || | |||| | || | |||||| ||| ||   | ||   || ||    || |   ||   | |  |    | ||    |||  || ||||  |||||| ||||||
CAGGAACATACTGGCCAATTCAGACAGCAAACTAAAGATCTGCGACTTTGGACTTGCACGTGCATCATTTAACGACTCTCTTTCAGCTATCTATTGGACAgtaagatcct-ttccatcaattttgtattcaatcatttttttgccccttatttcattaactattgtg-cttgcaacttgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|117220894|gb|CT845593.1|CT845593
EST:     GACTTGCACGTGTAGCATTTAATGATTCACCTTCAACAATTTTTTGGACC                         GATTATGTGGCAACAAGGTGGTACCGAGCTCCTGAATTATGTGGTTCTTTT
genomic: GACTTGCACGTGTAGCATTTAATGATTCACCTTCAACAATTTTTTGGACCgtacgacttt ... caatttgaagGATTATGTGGCAACAAGGTGGTACCGAGCTCCTGAATTATGTGGTTCTTTT
EST: gi|58655691|gb|CK044371.1|CK044371
EST:     GACTTGCACGTGTAGCATTTAATGATTCACCTTCAACAATTTTTGGGACC                         GATTATGTGGCAACAAGGTGGTACCGAGCTCCTGAATTATGTGGTTCTTTT
genomic: GACTTGCACGTGTAGCATTTAATGATTCACCTTCAACAATTTTTTGGACCgtacgacttt ... caatttgaagGATTATGTGGCAACAAGGTGGTACCGAGCTCCTGAATTATGTGGTTCTTTT
EST: gi|33677513|gb|CF305752.1|CF305752
EST:     GACTTGCACGTGTAGCATTTAATGATTCACCTTCAACAATTTTTTGGACC                         GATTATGTGGCAACAAGGTGGTACCGAGCTCCTGAATTATGTGGTTCTTTT
genomic: GACTTGCACGTGTAGCATTTAATGATTCACCTTCAACAATTTTTTGGACCgtacgacttt ... caatttgaagGATTATGTGGCAACAAGGTGGTACCGAGCTCCTGAATTATGTGGTTCTTTT