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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTACAAGAACTTCAACAAGGCCGCCAGGGATCTCATCGGCCGCCTCCAGAAGGTCGATGGTGACAACTACCCAGAGgtagctagcagaaattggctctctctgaatctgaatgttcactctttggttgtttttaattggtagtatctgaatctgaatgaccacatttgattttaat...

Basic information

species Oryza sativa
transcript LOC_Os02g04030.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g04030.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G171349_T02 (Zea mays), 5'ss of exon 3
GGGTACAAGAACTTCAACAAGGCCGCCAGGGATCTCATCGGCCGCCTCCAGAAGGTCGATGGTGACAACTACCCAGAGgtagctagcagaaattggctctctctgaatctgaatgttcactc-tttggttgtttttaattggtagtatctgaatctgaatgaccacatttgattttaat
|||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||| || ||||||||||| |||||| |   | | |  |     ||  |    | |     |   || |         |  ||   ||     ||    ||  |||  | |  |          
GGGTACAAGAACTTCAACAAGGCCGCGAGGGACCTCATCGGACGCCTCCAGAAGATCGACGGAGACAACTACCCTGAGgtaccacactgcatgtcctgttcgatcgtccagtgaacttgttcgtccaagcaactgcaacaagtgcagccttctgctacatgctcgccctgtgcag----

upper sequence: LOC_Os02g04030.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA16G24670.1 (Glycine max), 5'ss of exon 4
GGGTACAAGAACTTCAACAAGGCCGCCAGGGATCTCATCGGCCGCCTCCAGAAGGTCGATGGTGACAACTACCCAGAGgtagctagcagaaattggctctctctgaatctgaatgttcactctttggttgtttttaattggtagtatctgaatctgaatg--accacatt--tgattttaat----
|||   |||||||||||||||   |||||||| ||||||  |||||| |||||| | || |||||||||||||| || |||  |         |   |  ||     | |  ||      |   | |    |    ||||    |  |||| |   |||   |  | |||  ||  || | |    
GGGCTTAAGAACTTCAACAAGCATGCCAGGGAGCTCATCACCCGCCTTCAGAAGATTGACGGTGACAACTACCCTGAAgtatgttttttcttgtattttgcttaaggtttacataaaagtttagttgcaaataaatattgtggattgctgagttgtaatatcataaaattggtggcttcactgcag

upper sequence: LOC_Os02g04030.3 (Oryza sativa), 5'ss of exon 3
lower sequence: AT2G18180.1 (Arabidopsis thaliana), 5'ss of exon 5
GGGTACAAGAACTTCAACAAGGCCGCCAGGGATCTCATCGGCCGCCTCCAGAAGGTCGATGGTGACAACTACCCAGAGgtagctagcagaaattggctctctctgaatctgaatgttcactctttggttgtttttaattggtagtatctgaatctgaatgaccacatttgattttaat
|||   || |||||||||||||| || |||||| | ||    || || || |||||||||||||||||||| ||||||||       | |   |     ||  ||  |    || ||   |   || || ||  |   |   | | | |   |     |  |     |||  |     
GGGCTGAAAAACTTCAACAAGGCAGCAAGGGATTTGATTACGCGTCTTCAAAAGGTCGATGGTGACAACTATCCAGAGgtgcactttatattattatcatcattggttt---atcttttatgaatgattcttgctctctca-acttttttttttcatttatctgtcattggctcag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66932181|gb|CX119029.1|CX119029
EST:     GGGATCTCATCGGCCGCCTCCAGAAGGTCGATGGTGACAACTACCCAGAG                         ACTCTGTGCCGGATGTTCATCATCAACGCCGGTCAAGGATTCAGGCTTCTC
genomic: GGGATCTCATCGGCCGCCTCCAGAAGGTCGATGGTGACAACTACCCAGAGgtagctagca ... attgatgcagACTCTGTGCCGGATGTTCATCATCAACGCCGGTCAAGGATTCAGGCTTCTC